Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-184 649.4 319 100.0
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.2e-144 515.4 469 60.8
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.8e-132 475.7 468 56.8
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 6.2e-132 474.6 468 56.4
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-131 473.8 465 56.6
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.4e-131 473.4 469 56.5
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.3e-131 472.6 468 55.8
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 6.8e-131 471.1 469 56.3
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.2e-130 470.3 468 56.0
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 2.0e-130 469.5 469 55.7
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 2.6e-130 469.2 469 55.2
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.6e-130 469.2 408 61.3
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 3.4e-130 468.8 468 56.2
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 3.4e-130 468.8 468 56.2
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 5.8e-130 468.0 469 55.4
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 5.8e-130 468.0 468 55.3
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 7.6e-130 467.6 467 55.7
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 9.9e-130 467.2 468 55.6
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.3e-129 466.8 469 55.2
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.3e-129 466.8 468 55.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.3e-129 466.8 468 55.3
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.7e-129 466.5 463 55.5
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.2e-129 466.1 468 55.3
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.9e-129 465.7 467 55.5
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.9e-129 465.7 467 55.5
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.7e-129 465.3 468 55.1
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 3.7e-129 465.3 468 55.1
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 6.4e-129 464.5 468 55.3
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 6.4e-129 464.5 468 55.1
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 8.3e-129 464.2 467 55.0
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.1e-128 463.8 469 54.8
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.4e-128 463.4 468 55.1
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.4e-128 463.4 468 54.7
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.4e-128 462.6 468 54.9
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.4e-128 462.6 466 54.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.4e-128 462.6 469 54.8
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.4e-128 462.6 469 54.8
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 3.2e-128 462.2 468 54.9
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.1e-128 461.8 469 55.0
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 4.1e-128 461.8 468 54.9
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.1e-128 461.8 469 54.6
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 4.1e-128 461.8 468 55.6
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 5.4e-128 461.5 466 55.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 5.4e-128 461.5 468 54.5
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 7.1e-128 461.1 468 54.7
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 7.1e-128 461.1 468 55.1
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 7.1e-128 461.1 468 55.1
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 9.2e-128 460.7 468 54.5
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.2e-127 460.3 466 54.9
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.6e-127 459.9 468 54.5
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.1e-127 459.5 468 54.5
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.1e-127 459.5 468 55.3
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 3.5e-127 458.8 468 54.5
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 3.5e-127 458.8 468 54.3
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.5e-127 458.8 468 53.6
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 7.8e-127 457.6 468 54.9
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.0e-126 457.2 468 53.4
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.0e-126 455.7 468 53.4
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.9e-126 455.3 466 54.3
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 5.1e-126 454.9 466 54.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 5.1e-126 454.9 468 54.1
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 6.6e-126 454.5 468 54.1
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 6.6e-126 454.5 466 54.7
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.5e-125 453.4 468 53.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.5e-125 453.4 465 53.5
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-125 453.0 466 54.9
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.9e-125 453.0 468 53.6
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.5e-125 452.6 468 54.1
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 3.3e-125 452.2 466 54.9
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-125 452.2 466 54.9
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-125 452.2 466 54.9
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 3.3e-125 452.2 466 54.9
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 4.3e-125 451.8 466 54.7
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 4.3e-125 451.8 468 53.0
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 5.6e-125 451.4 466 54.1
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 5.6e-125 451.4 460 55.0
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.6e-125 451.4 455 54.5
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 5.6e-125 451.4 455 54.5
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.3e-125 451.1 457 54.3
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 7.3e-125 451.1 468 54.1
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 9.6e-125 450.7 466 54.3
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 9.6e-125 450.7 468 54.1
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-124 449.9 466 54.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-124 449.9 466 54.5
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.6e-124 449.9 466 54.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.6e-124 449.9 466 54.5
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-124 449.5 466 53.9
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.1e-124 449.5 472 53.6
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.8e-124 449.1 468 53.8
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 3.6e-124 448.7 466 54.5
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.7e-124 448.4 457 53.8
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 6.2e-124 448.0 466 54.5
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 8.1e-124 447.6 468 53.2
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 8.1e-124 447.6 455 54.7
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.4e-123 446.8 468 53.2
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.8e-123 446.4 457 53.6
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-123 446.4 467 53.1
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.8e-123 446.4 466 53.4
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.8e-123 446.4 468 53.2
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 2.4e-123 446.0 465 53.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.8e-123 444.5 454 54.2
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.8e-123 444.5 467 53.1
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 6.8e-123 444.5 472 53.0
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.8e-123 444.5 472 53.0
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 6.8e-123 444.5 467 52.2
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.2e-122 443.7 466 53.9
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.0e-122 443.0 466 53.2
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.6e-122 442.6 466 53.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.4e-122 442.2 472 53.0
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 7.6e-122 441.0 468 52.6
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 9.9e-122 440.7 454 53.7
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.7e-121 439.9 468 52.4
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.9e-121 439.1 468 52.1
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 4.9e-121 438.3 463 52.9
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 6.4e-121 438.0 473 52.0
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.9e-120 436.4 467 52.2
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.6e-118 427.9 468 51.3
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.9e-117 426.4 457 52.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.3e-117 425.6 466 52.4
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 4.3e-117 425.2 456 52.0
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.3e-117 425.2 468 51.1
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.8e-116 422.5 471 51.4
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 8.1e-116 421.0 442 53.6
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-115 420.6 468 51.3
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.2e-114 417.2 462 50.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.5e-114 416.8 475 49.9
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 3.4e-114 415.6 455 51.0
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 7.6e-114 414.5 456 50.7
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.3e-113 413.7 456 50.7
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 9.3e-112 407.5 468 50.0
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.1e-111 406.4 457 50.5
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-111 404.8 402 55.2
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 7.9e-111 404.4 468 48.3
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.6e-108 396.7 468 47.6
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.1e-108 396.4 468 48.3
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 5.3e-107 391.7 473 46.5
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 9.0e-107 391.0 454 49.1
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.2e-105 386.3 468 47.6
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.3e-99 365.2 336 59.8
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 4.9e-97 358.6 469 46.3
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-96 357.5 469 46.5
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.6e-95 353.6 425 48.7
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.1e-93 347.4 335 55.8
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.2e-92 341.3 205 82.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.0e-90 336.7 310 57.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.5e-90 335.5 321 56.4
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.1e-79 300.1 205 69.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 9.7e-77 291.2 368 45.4
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.6e-69 266.5 454 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.4e-69 265.8 450 35.6
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.1e-67 261.2 323 48.9
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 8.5e-65 251.5 429 35.2
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.2e-64 249.6 211 63.0
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.7e-60 236.1 418 35.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.3e-54 216.9 138 76.1
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 5.4e-51 205.7 198 54.5
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 9.1e-51 204.9 198 54.5
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 8.8e-46 188.3 320 40.9
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 5.7e-45 185.7 131 67.2
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 9.8e-45 184.9 139 65.5
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.2e-37 161.4 108 76.9
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.3e-36 157.9 103 78.6
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 4.9e-36 156.0 121 66.9
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 4.9e-36 156.0 121 66.9
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-35 154.1 121 66.9
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 5.9e-34 149.1 121 66.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 7.8e-34 148.7 121 62.0
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.4e-30 137.9 88 69.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 8.3e-28 128.6 128 49.2
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.2e-26 124.8 76 72.4
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 7.8e-26 122.1 392 25.8
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.3e-25 120.6 66 77.3
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 8.3e-20 102.1 103 49.5
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.9e-16 90.9 146 39.7
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.2e-15 88.2 136 41.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-11 74.3 51 72.5
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.5e-10 70.1 90 43.3
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 4.7e-07 59.7 52 63.5
CSS0019854 Camellia sinensis var. sinensis HOM05D000597 ORTHO05D000603 1.4e-06 58.2 107 31.8
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 3.1e-06 57.0 135 27.4
Nn8g38842 Nelumbo nucifera HOM05D000597 ORTHO05D000603 4.0e-06 56.6 128 29.7


User provided reference genes

Program Settings