Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 3.2e-63 245.0 128 100.0
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 7.6e-49 197.2 126 70.6
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.7e-48 196.1 126 70.6
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 2.9e-48 195.3 125 72.8
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 1.4e-47 193.0 126 71.4
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 2.5e-47 192.2 126 68.3
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 3.2e-47 191.8 126 69.8
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 4.2e-47 191.4 126 69.8
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 7.1e-47 190.7 126 70.6
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 7.1e-47 190.7 126 71.4
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 9.3e-47 190.3 126 69.0
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 2.1e-46 189.1 125 68.8
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 3.5e-46 188.3 126 70.6
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 3.5e-46 188.3 126 70.6
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 6.1e-46 187.6 127 70.1
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 7.9e-46 187.2 127 67.7
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 1.0e-45 186.8 126 71.4
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.0e-45 186.8 127 68.5
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.3e-45 186.4 127 68.5
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 1.8e-45 186.0 126 69.8
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.0e-45 185.3 126 68.3
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 3.0e-45 185.3 126 68.3
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 3.9e-45 184.9 126 65.1
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 3.9e-45 184.9 126 69.0
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 6.7e-45 184.1 126 67.5
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 6.7e-45 184.1 126 68.3
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 6.7e-45 184.1 126 68.3
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 6.7e-45 184.1 126 69.0
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 8.7e-45 183.7 126 69.8
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.7e-45 183.7 127 67.7
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 8.7e-45 183.7 126 67.5
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 8.7e-45 183.7 126 66.7
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 1.5e-44 183.0 126 65.9
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.5e-44 183.0 126 69.8
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.5e-44 183.0 126 66.7
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 1.5e-44 183.0 126 66.7
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.9e-44 182.6 126 69.8
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 2.5e-44 182.2 126 66.7
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 3.3e-44 181.8 127 66.9
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 3.3e-44 181.8 126 68.3
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 3.3e-44 181.8 126 65.1
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 4.3e-44 181.4 126 66.7
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 4.3e-44 181.4 126 65.1
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 5.7e-44 181.0 127 68.5
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 5.7e-44 181.0 127 68.5
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 5.7e-44 181.0 126 64.3
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 5.7e-44 181.0 126 69.0
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 7.4e-44 180.6 126 65.1
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 7.4e-44 180.6 126 67.5
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 7.4e-44 180.6 126 67.5
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 7.4e-44 180.6 126 67.5
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 7.4e-44 180.6 126 66.7
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 9.7e-44 180.3 126 65.1
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 9.7e-44 180.3 126 67.5
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 1.3e-43 179.9 126 65.9
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 1.3e-43 179.9 126 66.7
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 1.3e-43 179.9 134 62.7
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.3e-43 179.9 127 67.7
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 1.3e-43 179.9 126 65.1
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 1.6e-43 179.5 126 66.7
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.6e-43 179.5 126 65.1
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.8e-43 178.7 126 66.7
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 2.8e-43 178.7 121 71.9
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 2.8e-43 178.7 126 66.7
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 3.7e-43 178.3 126 66.7
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 3.7e-43 178.3 126 66.7
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 4.8e-43 177.9 126 65.9
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 4.8e-43 177.9 126 66.7
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 4.8e-43 177.9 126 65.9
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 4.8e-43 177.9 126 66.7
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 6.3e-43 177.6 126 62.7
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 8.2e-43 177.2 115 69.6
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 8.2e-43 177.2 126 66.7
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 8.2e-43 177.2 126 66.7
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 8.2e-43 177.2 126 67.5
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 8.2e-43 177.2 118 67.8
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.1e-42 176.8 116 71.6
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.1e-42 176.8 126 65.9
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 1.1e-42 176.8 126 65.9
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.4e-42 176.4 126 62.7
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.4e-42 176.4 126 66.7
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 1.8e-42 176.0 126 63.5
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.8e-42 176.0 127 65.4
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 1.8e-42 176.0 115 69.6
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 2.4e-42 175.6 126 66.7
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.1e-42 175.3 126 64.3
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 3.1e-42 175.3 126 65.9
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 3.1e-42 175.3 146 61.6
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 5.3e-42 174.5 126 65.9
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 5.3e-42 174.5 126 65.1
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 5.3e-42 174.5 126 64.3
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 6.9e-42 174.1 127 66.1
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 6.9e-42 174.1 115 71.3
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 9.0e-42 173.7 112 72.3
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.2e-41 173.3 126 63.5
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.2e-41 173.3 127 66.1
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 1.5e-41 172.9 126 62.7
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 1.5e-41 172.9 115 71.3
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.4e-41 171.8 126 61.9
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 4.5e-41 171.4 126 61.9
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 5.9e-41 171.0 126 64.3
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.0e-40 170.2 126 61.9
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.9e-40 168.7 85 98.8
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 3.8e-40 168.3 126 61.1
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 5.0e-40 167.9 118 66.9
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 5.0e-40 167.9 118 66.1
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 5.0e-40 167.9 118 66.1
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 2.5e-39 165.6 128 63.3
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 2.5e-39 165.6 126 62.7
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 9.4e-39 163.7 126 61.1
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 1.6e-38 162.9 127 63.0
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 1.6e-38 162.9 127 63.0
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 1.6e-38 162.9 127 63.0
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 2.1e-38 162.5 116 67.2
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 2.1e-38 162.5 110 75.5
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 2.1e-38 162.5 126 61.1
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 2.7e-38 162.2 126 61.9
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 7.9e-38 160.6 126 60.3
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 7.9e-38 160.6 126 60.3
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.4e-37 159.8 126 61.1
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 2.3e-37 159.1 115 65.2
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 3.0e-37 158.7 115 62.6
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 3.9e-37 158.3 126 61.1
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 3.9e-37 158.3 126 60.3
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.9e-37 158.3 126 60.3
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 3.9e-37 158.3 114 66.7
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 3.9e-37 158.3 133 58.6
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 5.1e-37 157.9 126 59.5
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 5.1e-37 157.9 141 58.9
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 6.7e-37 157.5 157 51.0
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 6.7e-37 157.5 139 56.8
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 8.8e-37 157.1 115 62.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 8.8e-37 157.1 126 59.5
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 2.0e-36 156.0 126 57.9
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 2.0e-36 156.0 126 58.7
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 2.5e-36 155.6 117 62.4
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 9.7e-36 153.7 116 62.1
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 9.7e-36 153.7 105 64.8
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 1.7e-35 152.9 118 63.6
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.1e-34 150.2 126 57.9
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.1e-34 150.2 115 61.7
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 1.8e-34 149.4 117 63.2
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 1.8e-34 149.4 126 60.3
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.4e-34 149.1 113 61.9
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.1e-34 148.7 126 57.9
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 4.1e-34 148.3 126 57.1
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 9.1e-34 147.1 115 61.7
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 3.4e-33 145.2 143 52.4
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.1e-31 140.2 97 69.1
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 4.2e-31 138.3 126 54.8
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 5.5e-31 137.9 117 60.7
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 7.2e-31 137.5 126 54.8
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 1.0e-29 133.7 118 56.8
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 2.3e-29 132.5 106 65.1
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 8.8e-29 130.6 85 70.6
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 2.0e-28 129.4 110 57.3
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 5.7e-28 127.9 117 54.7
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 8.2e-27 124.0 121 52.1
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 9.1e-26 120.6 85 69.4
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 4.5e-25 118.2 85 67.1
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.3e-24 116.7 88 65.9
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 5.0e-24 114.8 109 52.3
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 1.9e-23 112.8 86 64.0
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 9.4e-23 110.5 85 60.0
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 4.7e-22 108.2 108 51.9
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 1.0e-21 107.1 83 63.9
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 8.8e-21 104.0 85 60.0
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.1e-20 103.6 67 76.1
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 3.3e-20 102.1 79 62.0
BcaNung04934 Brassica carinata HOM05D003598 ORTHO05D004198 6.3e-19 97.8 88 54.5
Cre11.g475350 Chlamydomonas reinhardtii HOM05D003598 ORTHO05D004198 1.7e-16 89.7 104 45.2
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 2.9e-16 89.0 95 50.5
Actinidia24398 Actinidia chinensis HOM05D003598 ORTHO05D004198 6.5e-16 87.8 61 62.3
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 7.2e-15 84.3 85 50.6
PRCOL_00002502 Prasinoderma coloniale HOM05D003598 ORTHO05D004198 8.3e-11 70.9 101 39.6
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 1.1e-10 70.5 63 58.7
SEGI_32675 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.4e-10 70.1 36 80.6
Ca_03029_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.6e-09 66.6 34 76.5
Cfa022453 Carpinus fangiana HOM05D003598 ORTHO05D004198 8.5e-08 60.8 145 30.3
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 1.2e-06 57.0 48 54.2


User provided reference genes

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