Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 9.6e-240 833.9 762 100.0
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 5.4e-33 147.1 252 37.7
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 7.0e-33 146.7 253 36.0
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 2.1e-32 145.2 251 37.5
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 7.8e-32 143.3 246 35.8
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 1.7e-31 142.1 248 33.9
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 2.3e-31 141.7 321 29.9
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 3.0e-31 141.4 242 35.1
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 3.9e-31 141.0 248 34.3
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 3.9e-31 141.0 254 34.6
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 3.9e-31 141.0 254 34.6
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 6.6e-31 140.2 254 34.3
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 8.6e-31 139.8 252 34.9
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 8.6e-31 139.8 250 36.8
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 1.1e-30 139.4 320 40.0
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 1.9e-30 138.7 250 36.4
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 2.5e-30 138.3 251 33.1
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 4.3e-30 137.5 251 34.7
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 5.6e-30 137.1 246 33.3
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 7.3e-30 136.7 252 36.1
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 1.6e-29 135.6 253 33.6
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 2.8e-29 134.8 250 34.0
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 3.6e-29 134.4 246 35.4
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 4.7e-29 134.0 248 34.3
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 6.2e-29 133.7 225 37.8
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 8.1e-29 133.3 251 35.1
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 8.1e-29 133.3 229 36.2
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-28 132.5 251 34.7
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 1.4e-28 132.5 253 32.0
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 2.3e-28 131.7 251 34.3
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 2.3e-28 131.7 251 34.3
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 2.3e-28 131.7 248 32.3
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 3.1e-28 131.3 248 31.9
Ca_06133_v3 Cicer arietinum L. HOM05D006503 ORTHO05D008116 4.0e-28 131.0 253 35.2
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 5.2e-28 130.6 322 28.9
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 6.8e-28 130.2 248 31.9
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 6.8e-28 130.2 251 32.7
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 8.9e-28 129.8 249 33.3
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 1.2e-27 129.4 249 31.7
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 1.2e-27 129.4 226 35.0
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 1.5e-27 129.0 248 31.5
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 1.5e-27 129.0 248 31.5
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 1.5e-27 129.0 248 31.9
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 1.5e-27 129.0 251 32.3
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 2.0e-27 128.6 251 33.9
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 2.6e-27 128.3 251 30.7
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 3.4e-27 127.9 249 31.7
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 5.8e-27 127.1 252 34.9
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 7.5e-27 126.7 250 33.6
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 7.5e-27 126.7 252 34.9
arahy.Tifrunner.gnm1.ann1.KC4DMY Arachis hypogaea HOM05D006503 ORTHO05D008116 1.3e-26 125.9 251 33.1
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 1.7e-26 125.6 248 32.3
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.9e-26 124.8 251 33.5
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 3.7e-26 124.4 251 32.3
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 3.7e-26 124.4 247 31.6
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 4.9e-26 124.0 251 33.1
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 4.9e-26 124.0 245 33.9
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 6.4e-26 123.6 252 32.1
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 1.1e-25 122.9 251 31.5
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 1.1e-25 122.9 179 40.8
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 3.2e-25 121.3 251 32.3
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 5.4e-25 120.6 249 31.3
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 7.1e-25 120.2 159 40.3
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 9.2e-25 119.8 135 43.7
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 7.8e-24 116.7 170 42.4
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.0e-23 116.3 252 31.7
arahy.Tifrunner.gnm1.ann1.1KXV0X Arachis hypogaea HOM05D006503 ORTHO05D008116 1.3e-23 115.9 242 32.6
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 1.7e-23 115.5 218 34.4
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 3.0e-23 114.8 247 29.6
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 6.6e-23 113.6 251 29.9
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 1.1e-22 112.8 245 30.6
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.1e-22 112.8 247 30.0
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 1.5e-22 112.5 236 30.1
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 1.9e-22 112.1 246 32.1
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 1.9e-22 112.1 251 29.9
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 4.3e-22 110.9 175 38.9
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 7.3e-22 110.2 220 32.7
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 9.5e-22 109.8 247 29.6
Psat5g067680 Pisum sativum HOM05D006503 ORTHO05D008116 1.2e-21 109.4 253 29.6
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 1.2e-21 109.4 320 29.4
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 2.8e-21 108.2 251 30.3
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 4.7e-21 107.5 140 38.6
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 3.1e-20 104.8 250 31.2
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 2.0e-19 102.1 318 24.2
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 5.8e-19 100.5 177 35.6
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 5.8e-19 100.5 177 35.6
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 9.9e-19 99.8 179 34.6
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 9.9e-19 99.8 316 24.1
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 1.7e-18 99.0 145 37.9
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 2.2e-18 98.6 142 37.3
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 8.4e-18 96.7 125 40.0
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 8.4e-18 96.7 141 36.9
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 1.1e-17 96.3 248 28.6
MELO3C019605.2 Cucumis melo HOM05D006503 ORTHO05D008116 2.4e-17 95.1 140 35.7
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 2.4e-17 95.1 321 34.0
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 4.2e-17 94.4 173 32.9
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 5.4e-17 94.0 150 36.0
Glyma.06G144800 Glycine max HOM05D006503 ORTHO05D008116 1.6e-16 92.4 250 27.6
Os09g0110200 Oryza sativa ssp. japonica HOM05D006503 ORTHO05D008116 1.6e-16 92.4 251 27.1
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 2.7e-16 91.7 141 34.8
TPR.G29649 Trifolium pratense HOM05D006503 ORTHO05D008116 3.5e-16 91.3 231 27.3
SEGI_01901 Sequoiadendron giganteum HOM05D006503 ORTHO05D008116 4.6e-16 90.9 244 28.7
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.0e-15 89.7 251 25.9
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 1.3e-15 89.4 154 33.1
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 1.7e-15 89.0 166 32.5
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 3.9e-15 87.8 195 30.8
arahy.Tifrunner.gnm1.ann1.J10LLE Arachis hypogaea HOM05D006503 ORTHO05D008116 4.3e-14 84.3 229 29.7
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 1.8e-12 79.0 73 49.3
ATR0177G061 Amborella trichopoda HOM05D006503 ORTHO05D008116 1.5e-11 75.9 65 61.5
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 3.4e-11 74.7 138 29.0
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 2.9e-10 71.6 138 27.5
Zm00001eb221750 Zea mays HOM05D006503 ORTHO05D008116 1.1e-09 69.7 323 21.4
Phvul.009G141200 Phaseolus vulgaris HOM05D006503 ORTHO05D008116 3.2e-09 68.2 67 47.8
Oeu051440.2 Olea europaea HOM05D006080 ORTHO05D007382 4.2e-09 67.8 149 30.9
Nn1g08093 Nelumbo nucifera HOM05D007661 ORTHO05D009671 2.7e-08 65.1 141 27.0
ATR0907G005 Amborella trichopoda HOM05D007661 ORTHO05D009671 4.6e-08 64.3 141 27.0
TAR362G0078 Trochodendron aralioides HOM05D007661 ORTHO05D009671 4.6e-08 64.3 138 26.1
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 4.6e-08 64.3 69 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 6.0e-08 63.9 153 28.8
CDE02G3106 Ceratophyllum demersum HOM05D007661 ORTHO05D009671 7.8e-08 63.5 148 25.0
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 7.8e-08 63.5 128 28.9
Potri.013G121101 Populus trichocarpa HOM05D007319 ORTHO05D008576 1.0e-07 63.2 110 36.4
SEGI_27186 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 1.3e-07 62.8 180 23.9
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 2.3e-07 62.0 111 34.2
FvH4_6g18940 Fragaria vesca HOM05D008470 ORTHO05D010644 6.6e-07 60.5 221 24.0
Lsat_1_v5_gn_4_103720 Lactuca sativa HOM05D006749 ORTHO05D008352 8.7e-07 60.1 158 25.3
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 1.1e-06 59.7 125 28.0
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.1e-06 59.7 117 32.5
DCAR_020137 Daucus carota HOM05D007661 ORTHO05D009671 1.5e-06 59.3 145 26.9
Eucgr.J02992 Eucalyptus grandis HOM05D006749 ORTHO05D008352 1.5e-06 59.3 139 26.6
Sc14g0003020 Simmondsia chinensis HOM05D006174 ORTHO05D007987 1.5e-06 59.3 97 36.1
Actinidia21299 Actinidia chinensis HOM05D006174 ORTHO05D007987 1.9e-06 58.9 86 36.0
FvH4_3g08550 Fragaria vesca HOM05D002986 ORTHO05D007611 1.9e-06 58.9 57 49.1
Pp3c5_26320 Physcomitrium patens HOM05D000424 ORTHO05D000355 1.9e-06 58.9 131 29.8
BcaB04g17087 Brassica carinata HOM05D002453 ORTHO05D008746 2.5e-06 58.5 142 31.0
FAN11G0723 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.5e-06 58.5 57 49.1
FAN16G0081 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.5e-06 58.5 57 49.1
AUR62000377 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.3e-06 58.2 90 33.3
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 3.3e-06 58.2 108 32.4
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 3.3e-06 58.2 216 23.1
FAN07G2492 Fragaria x ananassa HOM05D002986 ORTHO05D007611 3.3e-06 58.2 57 49.1
FAN22G0034 Fragaria x ananassa HOM05D002986 ORTHO05D007611 3.3e-06 58.2 57 49.1
TAR624G1385 Trochodendron aralioides HOM05D002986 ORTHO05D007611 3.3e-06 58.2 58 50.0
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.3e-06 57.8 220 24.1
AUR62006756 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.3e-06 57.8 90 34.4
ECA240G4803 Erigeron canadensis HOM05D000017 ORTHO05D000013 4.3e-06 57.8 116 30.2
FAN12G1172 Fragaria x ananassa HOM05D002986 ORTHO05D007611 4.3e-06 57.8 57 49.1
HanXRQChr05g0151261 Helianthus annuus HOM05D007661 ORTHO05D009671 4.3e-06 57.8 142 27.5
HanXRQChr09g0275241 Helianthus annuus HOM05D006749 ORTHO05D008352 4.3e-06 57.8 158 24.7
Medtr1g039290 Medicago truncatula HOM05D010072 ORTHO05D011797 4.3e-06 57.8 138 28.3
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 5.6e-06 57.4 165 27.9
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.6e-06 57.4 159 25.2
FAN25G0667 Fragaria x ananassa HOM05D002986 ORTHO05D007611 5.6e-06 57.4 57 49.1
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 5.6e-06 57.4 163 29.4
CAN.G1503.13 Capsicum annuum HOM05D006174 ORTHO05D007987 7.3e-06 57.0 168 25.6
FvH4_4g07830 Fragaria vesca HOM05D002986 ORTHO05D007611 7.3e-06 57.0 57 49.1
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 7.3e-06 57.0 110 34.5
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 7.3e-06 57.0 110 34.5
PSO832G2909 Papaver somniferum HOM05D006174 ORTHO05D007987 7.3e-06 57.0 89 33.7
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 7.3e-06 57.0 99 33.3
CiPaw.10G052700 Carya illinoinensis HOM05D002986 ORTHO05D007611 9.6e-06 56.6 60 46.7
Migut.G01062 Erythranthe guttata HOM05D040971 ORTHO05D003288 9.6e-06 56.6 114 29.8


User provided reference genes

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