Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1848 Ceratophyllum demersum HOM05D003980 ORTHO05D019435 1.1e-75 286.6 143 100.0
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 6.8e-14 81.3 88 50.0
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 4.4e-13 78.6 73 54.8
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 7.5e-13 77.8 74 54.1
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 1.7e-12 76.6 78 48.7
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 2.9e-12 75.9 89 47.2
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 4.9e-12 75.1 51 62.7
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 6.4e-12 74.7 89 39.3
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 6.4e-12 74.7 86 44.2
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 8.3e-12 74.3 81 48.1
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 8.3e-12 74.3 74 51.4
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 1.1e-11 73.9 63 55.6
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 1.4e-11 73.6 50 66.0
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 1.9e-11 73.2 73 52.1
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 1.9e-11 73.2 73 52.1
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.9e-11 73.2 75 48.0
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 1.9e-11 73.2 87 46.0
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 1.9e-11 73.2 81 53.1
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 2.4e-11 72.8 64 56.2
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 2.4e-11 72.8 84 40.5
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 2.4e-11 72.8 82 42.7
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 2.4e-11 72.8 50 64.0
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 3.2e-11 72.4 71 49.3
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 3.2e-11 72.4 49 63.3
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 4.1e-11 72.0 73 50.7
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 4.1e-11 72.0 87 47.1
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 4.1e-11 72.0 87 47.1
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 4.1e-11 72.0 87 47.1
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 4.1e-11 72.0 72 51.4
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 5.4e-11 71.6 73 49.3
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 7.1e-11 71.2 71 49.3
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 7.1e-11 71.2 73 47.9
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 1.2e-10 70.5 82 46.3
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 1.2e-10 70.5 61 50.8
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 1.6e-10 70.1 50 62.0
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 1.6e-10 70.1 50 62.0
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 1.6e-10 70.1 50 62.0
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 1.6e-10 70.1 50 62.0
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 1.6e-10 70.1 50 62.0
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 1.6e-10 70.1 50 62.0
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 1.6e-10 70.1 73 46.6
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 1.6e-10 70.1 50 62.0
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 2.1e-10 69.7 73 47.9
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 3.5e-10 68.9 50 60.0
SGA_v2.0_scaffold143G35744 Striga asiatica HOM05D003980 ORTHO05D005301 3.5e-10 68.9 92 41.3
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 4.6e-10 68.6 81 42.0
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 6.0e-10 68.2 73 46.6
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 2.3e-09 66.2 82 41.5
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 2.3e-09 66.2 88 39.8
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 3.0e-09 65.9 76 51.3
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 3.0e-09 65.9 74 51.4
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 3.0e-09 65.9 74 45.9
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 5.1e-09 65.1 80 43.8
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 5.1e-09 65.1 49 57.1
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 6.6e-09 64.7 76 42.1
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 6.6e-09 64.7 49 55.1
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 6.6e-09 64.7 71 43.7
CSS0005263 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D019435 8.6e-09 64.3 41 65.9
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 1.1e-08 63.9 49 57.1
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 1.1e-08 63.9 73 43.8
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 1.1e-08 63.9 73 43.8
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 1.5e-08 63.5 65 49.2
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 1.5e-08 63.5 65 49.2
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 1.9e-08 63.2 49 57.1
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 1.9e-08 63.2 66 50.0
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.5e-08 62.8 52 51.9
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.5e-08 62.8 52 51.9
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.5e-08 62.8 52 51.9
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.5e-08 62.8 52 51.9
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 2.5e-08 62.8 43 62.8
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 2.5e-08 62.8 47 55.3
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 4.3e-08 62.0 43 62.8
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 4.3e-08 62.0 42 64.3
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 4.3e-08 62.0 86 39.5
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 5.6e-08 61.6 68 45.6
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 5.6e-08 61.6 49 53.1
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 5.6e-08 61.6 41 65.9
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 5.6e-08 61.6 49 53.1
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 7.3e-08 61.2 45 55.6
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 7.3e-08 61.2 49 63.3
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 7.3e-08 61.2 66 45.5
CSS0039620 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D019435 9.5e-08 60.8 41 63.4
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 9.5e-08 60.8 46 56.5
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 1.6e-07 60.1 40 65.0
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 1.6e-07 60.1 49 51.0
Actinidia25531 Actinidia chinensis HOM05D003980 ORTHO05D019435 2.1e-07 59.7 48 54.2
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 2.1e-07 59.7 42 59.5
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 2.1e-07 59.7 42 59.5
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 2.1e-07 59.7 42 61.9
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 3.6e-07 58.9 39 64.1
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 4.7e-07 58.5 69 42.0
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 4.7e-07 58.5 43 55.8
SHI14117 Sapria himalayana HOM05D003980 ORTHO05D019435 4.7e-07 58.5 67 46.3
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 4.7e-07 58.5 63 42.9
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 4.7e-07 58.5 45 57.8
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 6.2e-07 58.2 46 58.7
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.1e-06 57.4 58 50.0
VMungo0540G0604 Vigna mungo HOM05D003980 ORTHO05D019435 1.1e-06 57.4 66 42.4
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 1.8e-06 56.6 43 58.1
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 2.4e-06 56.2 46 52.2
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 2.4e-06 56.2 43 53.5
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 3.1e-06 55.8 39 59.0
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 4.0e-06 55.5 43 55.8
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 5.2e-06 55.1 42 59.5


User provided reference genes

Program Settings