Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1469.1 783 100.0
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1243.4 922 76.6
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 1.6e-266 922.9 925 56.8
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 6.1e-266 921.0 926 56.4
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 1.2e-264 916.8 929 55.9
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 7.5e-264 914.1 938 56.0
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 1.9e-259 899.4 933 54.8
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 4.3e-259 898.3 931 55.3
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 2.1e-258 896.0 928 54.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 2.8e-258 895.6 933 54.8
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 8.9e-257 890.6 933 54.7
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 2.0e-256 889.4 937 55.0
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 2.6e-256 889.0 934 54.1
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 4.4e-256 888.3 932 54.9
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 2.9e-255 885.6 922 55.3
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 6.4e-255 884.4 931 54.5
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 4.1e-254 881.7 928 54.2
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 7.8e-253 877.5 890 55.1
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 1.3e-252 876.7 928 55.0
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 5.0e-252 874.8 938 53.1
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.9e-251 872.8 941 53.1
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 3.3e-251 872.1 924 54.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 3.3e-251 872.1 941 53.9
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 7.3e-251 870.9 942 53.2
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 7.3e-251 870.9 927 54.6
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 9.5e-251 870.5 940 54.0
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 9.5e-251 870.5 885 54.9
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 1.6e-250 869.8 940 53.5
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.1e-250 869.4 927 54.2
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 2.1e-250 869.4 928 53.7
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 4.7e-250 868.2 940 53.4
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 4.7e-250 868.2 934 53.5
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 1.4e-249 866.7 939 53.9
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 1.8e-249 866.3 927 53.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 3.1e-249 865.5 938 52.8
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 4.0e-249 865.1 927 53.3
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 5.2e-249 864.8 939 53.5
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 1.2e-248 863.6 927 52.9
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 2.6e-248 862.4 984 51.4
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 3.4e-248 862.1 929 53.2
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 3.7e-247 858.6 927 54.3
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 4.9e-247 858.2 929 52.6
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 8.3e-247 857.4 929 52.5
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 1.4e-246 856.7 926 52.6
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 1.4e-246 856.7 929 52.4
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 2.4e-246 855.9 892 54.6
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 1.2e-245 853.6 929 52.2
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 1.2e-245 853.6 898 53.0
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 6.0e-245 851.3 933 52.9
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 3.0e-244 849.0 937 52.2
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 6.6e-244 847.8 929 52.6
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 1.1e-243 847.0 945 52.7
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 3.3e-243 845.5 880 53.0
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 1.6e-242 843.2 870 55.4
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 1.1e-241 840.5 935 52.6
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 1.8e-241 839.7 881 52.4
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 1.8e-241 839.7 919 52.8
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 2.3e-241 839.3 930 51.7
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 5.2e-241 838.2 935 52.1
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 3.4e-240 835.5 942 51.8
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 4.4e-240 835.1 929 52.3
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 4.4e-240 835.1 939 52.1
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 5.8e-240 834.7 931 52.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 7.5e-240 834.3 926 51.2
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 7.5e-240 834.3 930 52.4
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 9.8e-240 833.9 930 51.9
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 9.8e-240 833.9 895 52.8
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 8.3e-239 830.9 887 52.2
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 7.1e-238 827.8 919 51.7
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 2.7e-237 825.9 930 51.5
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 2.7e-237 825.9 838 55.0
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 4.6e-237 825.1 936 51.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 1.3e-236 823.5 935 50.8
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 6.6e-236 821.2 921 51.0
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 2.5e-235 819.3 905 51.3
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 4.3e-235 818.5 925 51.1
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 4.3e-235 818.5 937 50.8
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 2.1e-234 816.2 925 50.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 3.6e-234 815.5 925 51.0
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 4.7e-234 815.1 925 50.8
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 1.1e-233 813.9 922 51.0
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 5.2e-233 811.6 932 50.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 4.4e-232 808.5 928 50.5
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 5.8e-232 808.1 923 50.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 1.7e-231 806.6 886 51.8
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 1.7e-231 806.6 886 51.8
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 3.8e-231 805.4 938 49.9
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 4.9e-231 805.1 880 51.4
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 8.4e-231 804.3 917 50.5
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 9.2e-230 800.8 902 50.4
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 4.6e-229 798.5 910 50.1
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 7.8e-229 797.7 882 51.0
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 7.8e-229 797.7 909 49.9
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 7.8e-229 797.7 879 51.1
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 8.6e-228 794.3 924 50.5
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 4.3e-227 792.0 876 50.7
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 1.7e-223 780.0 880 49.8
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 5.1e-220 768.5 844 50.0
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 1.0e-212 744.2 930 48.2
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 1.3e-212 743.8 816 52.8
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 6.2e-210 734.9 894 47.7
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 1.3e-207 727.2 900 48.9
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 4.6e-205 718.8 935 46.8
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 9.3e-198 694.5 778 52.6
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 1.0e-196 691.0 881 46.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 6.7e-196 688.3 733 52.8
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 2.1e-189 666.8 872 44.0
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 5.0e-183 645.6 712 52.0
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 2.7e-181 639.8 689 52.4
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 4.4e-179 632.5 893 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.5e-171 607.4 865 40.8
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.1e-165 587.0 700 48.1
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 3.5e-160 569.7 879 40.5
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 5.4e-137 492.7 398 64.6
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.1e-134 485.0 360 68.9
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.9e-130 470.3 613 44.9
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 9.9e-123 445.3 423 57.0
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 4.9e-122 443.0 357 65.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.6e-120 438.0 902 34.0
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.1e-110 405.2 369 58.5
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 8.4e-82 309.3 305 56.4
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 6.1e-64 250.0 305 51.1
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.7e-58 231.9 320 44.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-49 202.2 365 35.9
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 4.0e-47 194.1 942 26.5
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 3.7e-45 187.6 157 63.1
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.8e-37 161.4 225 43.6
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.6e-35 155.6 254 39.8
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.8e-31 142.1 968 21.7
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.6e-30 138.3 100 67.0
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 4.3e-25 120.9 89 67.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.8e-23 115.5 89 65.2
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 2.6e-22 111.7 113 57.5
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 6.4e-21 107.1 139 52.5
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-17 96.3 69 59.4
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-17 95.5 61 65.6
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 2.8e-08 65.1 79 49.4


User provided reference genes

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