Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1760 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 2.3e-63 245.4 121 100.0
CDE05G0820 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 2.5e-25 119.0 62 93.5
Atru.chr5.3316 Acer truncatum HOM05D000282 ORTHO05D000272 2.4e-20 102.4 83 62.7
Migut.B00014 Erythranthe guttata HOM05D007618 ORTHO05D009606 7.0e-20 100.9 62 74.2
Atru.chr8.2195 Acer truncatum HOM05D000282 ORTHO05D009606 1.2e-19 100.1 80 63.8
Cc09_g10690 Coffea canephora HOM05D007618 ORTHO05D009606 1.2e-19 100.1 62 75.8
MSTRG.19948 Avicennia marina HOM05D007618 ORTHO05D009606 1.6e-19 99.8 62 74.2
Ciclev10029401m.g Citrus clementina HOM05D007618 ORTHO05D009606 2.0e-19 99.4 62 74.2
MBI08_g32524_MAGBIO Magnolia biondii HOM05D007618 ORTHO05D009606 2.0e-19 99.4 62 72.6
Sabra09G0129500 Salix brachista HOM05D007618 ORTHO05D009606 2.7e-19 99.0 62 72.6
Cfa005346 Carpinus fangiana HOM05D007618 ORTHO05D009606 3.5e-19 98.6 62 72.6
Dinv14162 Davidia involucrata HOM05D007618 ORTHO05D009606 4.6e-19 98.2 62 72.6
TAR628G0843 Trochodendron aralioides HOM05D007618 ORTHO05D009606 4.6e-19 98.2 62 71.0
COL.COLO4_26755 Corchorus olitorius HOM05D007618 ORTHO05D009606 7.8e-19 97.4 62 74.2
QL11p055571 Quercus lobata HOM05D007618 ORTHO05D009606 7.8e-19 97.4 62 72.6
QL11p055874 Quercus lobata HOM05D007618 ORTHO05D009606 7.8e-19 97.4 62 72.6
Prupe.8G177800 Prunus persica HOM05D007618 ORTHO05D009606 1.0e-18 97.1 62 71.0
Rhsim11G0196900 Rhododendron simsii HOM05D007618 ORTHO05D009606 1.0e-18 97.1 62 71.0
MD10G1139000 Malus domestica HOM05D007618 ORTHO05D009606 1.3e-18 96.7 62 69.4
Gohir.A10G000200 Gossypium hirsutum HOM05D002478 ORTHO05D003331 1.7e-18 96.3 62 71.0
Gohir.D10G000400 Gossypium hirsutum HOM05D007618 ORTHO05D009606 1.7e-18 96.3 62 71.0
Gorai.011G000800 Gossypium raimondii HOM05D002478 ORTHO05D003331 1.7e-18 96.3 62 71.0
PSO675G2292 Papaver somniferum HOM05D007618 ORTHO05D009606 1.7e-18 96.3 62 74.2
Potri.009G165700 Populus trichocarpa HOM05D007618 ORTHO05D009606 1.7e-18 96.3 62 71.0
PGR142G1310 Punica granatum HOM05D007618 ORTHO05D009606 1.7e-18 96.3 62 69.4
Duzib235G1428 Durio zibethinus HOM05D007618 ORTHO05D009606 2.3e-18 95.9 62 69.4
Zm00001eb002550 Zea mays HOM05D007618 ORTHO05D009606 3.0e-18 95.5 62 69.4
MELO3C013504.2 Cucumis melo HOM05D007618 ORTHO05D009606 5.0e-18 94.7 62 69.4
SGA_v2.0_scaffold32G13341 Striga asiatica HOM05D007618 ORTHO05D009606 5.0e-18 94.7 62 67.7
TAR376G0137 Trochodendron aralioides HOM05D007618 ORTHO05D009606 5.0e-18 94.7 62 69.4
Actinidia18005 Actinidia chinensis HOM05D007618 ORTHO05D009606 6.6e-18 94.4 64 64.1
SalBow1G1919 Salvia bowleyana HOM05D007618 ORTHO05D009606 6.6e-18 94.4 62 69.4
CANSAT64G2827 Cannabis sativa HOM05D007618 ORTHO05D009606 8.6e-18 94.0 62 69.4
Nitab4.5_0011212g0030 Nicotiana tabacum HOM05D007618 ORTHO05D009606 1.1e-17 93.6 62 69.4
Sed0023624 Sechium edule HOM05D007618 ORTHO05D009606 1.1e-17 93.6 62 69.4
Thecc.06G045200 Theobroma cacao HOM05D007618 ORTHO05D009606 1.1e-17 93.6 62 69.4
CiPaw.05G091300 Carya illinoinensis HOM05D007618 ORTHO05D009606 1.5e-17 93.2 62 69.4
PSO541G4833 Papaver somniferum HOM05D007618 ORTHO05D009606 1.5e-17 93.2 62 72.6
Eucgr.I01514 Eucalyptus grandis HOM05D007618 ORTHO05D009606 1.9e-17 92.8 62 67.7
HPP92_022157 Vanilla planifolia HOM05D007618 ORTHO05D009606 1.9e-17 92.8 63 71.4
Manes.04G067600 Manihot esculenta HOM05D007618 ORTHO05D009606 2.5e-17 92.4 62 67.7
Sabra04G0138200 Salix brachista HOM05D007618 ORTHO05D009606 2.5e-17 92.4 62 67.7
Hund06167 Selenicereus undatus HOM05D007618 ORTHO05D009606 2.5e-17 92.4 62 67.7
Actinidia20565 Actinidia chinensis HOM05D007618 ORTHO05D009606 3.3e-17 92.0 62 66.1
AUR62011704 Chenopodium quinoa HOM05D007618 ORTHO05D009606 3.3e-17 92.0 58 72.4
ClCG02G010360 Citrullus lanatus HOM05D007618 ORTHO05D009606 3.3e-17 92.0 62 67.7
CsaV3_6G010180 Cucumis sativus L. HOM05D007618 ORTHO05D009606 3.3e-17 92.0 62 67.7
Nitab4.5_0000783g0170 Nicotiana tabacum HOM05D007618 ORTHO05D009606 3.3e-17 92.0 62 66.1
Hma1.2p1_0271F.1_g108950 Hydrangea macrophylla HOM05D007618 ORTHO05D009606 4.3e-17 91.7 62 66.1
Lj1g0004638 Lotus japonicus HOM05D007618 ORTHO05D009606 4.3e-17 91.7 62 71.0
Peaxi162Scf00362g00251 Petunia axillaris HOM05D007618 ORTHO05D009606 4.3e-17 91.7 62 67.7
Phvul.009G116000 Phaseolus vulgaris HOM05D007618 ORTHO05D009606 4.3e-17 91.7 62 69.4
TPR.G29338 Trifolium pratense HOM05D007618 ORTHO05D009606 4.3e-17 91.7 61 70.5
FvH4_2g16570 Fragaria vesca HOM05D007618 ORTHO05D009606 5.6e-17 91.3 62 66.1
FAN15G3577 Fragaria x ananassa HOM05D007618 ORTHO05D009606 5.6e-17 91.3 62 66.1
GSVIVG01023981001 Vitis vinifera HOM05D007618 ORTHO05D009606 5.6e-17 91.3 62 72.6
Potri.004G204700 Populus trichocarpa HOM05D007618 ORTHO05D009606 7.3e-17 90.9 62 67.7
DCAR_022841 Daucus carota HOM05D007618 ORTHO05D009606 1.2e-16 90.1 62 67.7
Solyc01g112170.3 Solanum lycopersicum HOM05D007618 ORTHO05D009606 1.2e-16 90.1 62 66.1
Sopen01g054220 Solanum pennellii HOM05D007618 ORTHO05D009606 1.2e-16 90.1 62 66.1
FAN27G0591 Fragaria x ananassa HOM05D007618 ORTHO05D009606 1.6e-16 89.7 62 64.5
RcHm_v2.0_Chr6g0280641 Rosa chinensis HOM05D007618 ORTHO05D009606 1.6e-16 89.7 62 66.1
EL10Ac9g21249 Beta vulgaris HOM05D007618 ORTHO05D009606 2.1e-16 89.4 58 69.0
Lsat_1_v5_gn_8_120421 Lactuca sativa HOM05D007618 ORTHO05D009606 2.1e-16 89.4 62 66.1
Glyma.06G000700 Glycine max HOM05D007618 ORTHO05D009606 2.8e-16 89.0 61 67.2
Sc18g0005980 Simmondsia chinensis HOM05D007618 ORTHO05D009606 2.8e-16 89.0 62 64.5
VMungo1309G2136 Vigna mungo HOM05D007618 ORTHO05D009606 4.7e-16 88.2 62 66.1
ECA233G1377 Erigeron canadensis HOM05D007618 ORTHO05D009606 6.2e-16 87.8 62 64.5
Nn6g31724 Nelumbo nucifera HOM05D007618 ORTHO05D009606 6.2e-16 87.8 62 64.5
HanXRQChr14g0459071 Helianthus annuus HOM05D007618 ORTHO05D009606 2.3e-15 85.9 62 62.9
arahy.Tifrunner.gnm1.ann1.I7PWT1 Arachis hypogaea HOM05D007618 ORTHO05D009606 5.2e-15 84.7 58 63.8
Atru.chr9.1689 Acer truncatum HOM05D000282 ORTHO05D009606 6.8e-15 84.3 56 69.6
arahy.Tifrunner.gnm1.ann1.U2J3P2 Arachis hypogaea HOM05D007618 ORTHO05D009606 8.9e-15 84.0 58 63.8
Lalb_Chr08g0246841 Lupinus albus HOM05D007618 ORTHO05D009606 1.2e-14 83.6 58 67.2
arahy.Tifrunner.gnm1.ann1.ZSY7EJ Arachis hypogaea HOM05D007618 ORTHO05D009606 2.0e-14 82.8 60 61.7
vmacro02327 Vaccinium macrocarpon HOM05D007618 ORTHO05D009606 2.6e-14 82.4 62 64.5
Psat5g000680 Pisum sativum HOM05D007618 ORTHO05D009606 2.7e-11 72.4 87 47.1
Atru.chr4.2937 Acer truncatum HOM05D000282 ORTHO05D000272 3.5e-11 72.0 94 45.7
SEGI_37348 Sequoiadendron giganteum HOM05D007618 ORTHO05D009606 6.0e-11 71.2 56 58.9
SMO367G1105 Selaginella moellendorffii HOM05D007618 ORTHO05D009606 6.6e-10 67.8 62 51.6
Mapoly0032s0019 Marchantia polymorpha HOM05D007618 ORTHO05D009606 2.1e-08 62.8 62 45.2
CBR_g37948 Chara braunii HOM05D007618 ORTHO05D009606 1.1e-07 60.5 57 43.9
CBR_g30676 Chara braunii HOM05D007618 ORTHO05D009606 1.4e-07 60.1 57 43.9
Pp3c3_10700 Physcomitrium patens HOM05D007618 ORTHO05D009606 8.9e-07 57.4 56 46.4
Atru.chr5.2713 Acer truncatum HOM05D000282 ORTHO05D000272 2.0e-06 56.2 80 42.5
Cre12.g506850 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 2.6e-06 55.8 60 48.3


User provided reference genes

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