Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.0e-121 439.1 218 100.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.5e-84 315.8 315 58.7
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 9.0e-66 254.2 256 55.1
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.4e-63 246.9 256 53.1
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.4e-63 246.1 307 48.2
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 4.2e-63 245.4 256 52.7
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.2e-63 245.4 311 46.6
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 5.4e-63 245.0 337 45.7
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 7.1e-63 244.6 278 49.6
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 7.1e-63 244.6 311 46.3
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 9.3e-63 244.2 256 52.7
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.2e-62 243.8 256 52.7
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.6e-62 243.4 308 46.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.6e-62 243.4 256 52.7
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.1e-62 243.0 241 53.9
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.1e-62 243.0 303 47.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 3.5e-62 242.3 256 52.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 6.0e-62 241.5 256 52.0
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 6.0e-62 241.5 256 52.3
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 7.9e-62 241.1 279 48.7
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 7.9e-62 241.1 256 52.0
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 7.9e-62 241.1 256 52.0
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 7.9e-62 241.1 256 52.0
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 7.9e-62 241.1 256 52.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.9e-62 241.1 256 52.7
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 7.9e-62 241.1 256 52.0
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 7.9e-62 241.1 256 52.0
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 7.9e-62 241.1 325 45.8
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.0e-61 240.7 256 51.6
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.0e-61 240.7 256 52.0
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.3e-61 240.4 299 46.8
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.3e-61 240.4 311 46.0
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.3e-61 240.4 284 49.6
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.3e-61 240.4 256 51.6
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 1.8e-61 240.0 256 51.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.8e-61 240.0 256 51.6
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.8e-61 240.0 278 48.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.8e-61 240.0 307 46.6
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.8e-61 240.0 256 51.6
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 2.3e-61 239.6 256 51.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 2.3e-61 239.6 256 51.6
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 2.3e-61 239.6 226 55.8
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.3e-61 239.6 315 45.7
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.0e-61 239.2 256 51.2
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 3.0e-61 239.2 256 52.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.9e-61 238.8 330 45.2
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.9e-61 238.8 303 46.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 3.9e-61 238.8 256 51.2
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 5.1e-61 238.4 256 51.2
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 5.1e-61 238.4 315 45.4
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 6.7e-61 238.0 308 45.5
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 6.7e-61 238.0 256 51.2
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 6.7e-61 238.0 308 45.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 8.7e-61 237.7 256 51.2
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 8.7e-61 237.7 256 52.3
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 8.7e-61 237.7 256 51.6
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.1e-60 237.3 256 51.2
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.5e-60 236.9 298 47.0
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.5e-60 236.9 309 45.6
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.5e-60 236.9 256 51.2
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.5e-60 236.9 256 51.6
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.9e-60 236.5 330 43.9
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.9e-60 236.5 250 51.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.9e-60 236.5 256 51.2
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.5e-60 236.1 307 45.6
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.5e-60 236.1 256 50.8
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.5e-60 236.1 256 51.2
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 3.3e-60 235.7 256 50.4
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.3e-60 235.3 256 51.2
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 7.4e-60 234.6 308 45.1
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 7.4e-60 234.6 256 51.2
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 9.6e-60 234.2 256 50.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 9.6e-60 234.2 256 50.4
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 9.6e-60 234.2 256 51.6
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 9.6e-60 234.2 256 51.6
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.3e-59 233.8 256 50.0
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.3e-59 233.8 256 51.2
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.1e-59 233.0 256 50.4
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 2.1e-59 233.0 249 51.0
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-59 233.0 256 51.6
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.8e-59 232.6 256 50.4
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 2.8e-59 232.6 256 50.0
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.8e-59 232.6 256 50.0
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 2.8e-59 232.6 256 50.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 4.8e-59 231.9 256 49.6
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 6.2e-59 231.5 256 50.0
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.1e-58 230.7 256 50.0
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.1e-58 230.7 256 49.6
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.8e-58 229.9 256 49.6
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.4e-58 229.6 252 50.0
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 5.3e-58 228.4 252 49.6
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.2e-57 227.3 257 50.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.7e-56 223.4 291 45.4
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-56 223.4 295 46.8
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 4.9e-56 221.9 278 46.4
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 6.4e-56 221.5 256 48.8
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.4e-55 220.3 256 48.8
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.4e-55 219.5 256 48.0
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.2e-55 218.8 256 48.0
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 5.5e-55 218.4 278 44.6
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 5.5e-55 218.4 256 48.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.5e-55 218.4 256 47.7
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 9.3e-55 217.6 233 51.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-54 216.9 256 47.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-53 214.2 256 47.7
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.1e-53 211.8 253 47.4
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.8e-50 203.4 256 44.1
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.8e-50 203.4 256 44.5
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.4e-50 203.0 256 44.1
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 4.0e-50 202.2 238 44.5
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.5e-49 200.3 256 45.3
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.5e-49 200.3 344 39.8
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 5.8e-49 198.4 256 45.7
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.6e-49 198.0 217 51.2
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 3.8e-48 195.7 217 50.2
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 6.5e-48 194.9 256 43.4
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 8.4e-48 194.5 301 42.5
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.4e-47 193.7 218 49.5
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.1e-44 184.1 256 39.1
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.5e-44 183.7 258 43.0
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.4e-42 177.2 282 40.1
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 9.3e-39 164.5 208 48.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.3e-35 154.1 82 84.1
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 3.7e-35 152.5 204 43.1
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 4.8e-35 152.1 82 82.9
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.6e-33 146.4 82 80.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-29 133.3 223 39.5
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.0e-29 132.9 162 46.3
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.3e-27 125.2 87 71.3
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.1e-26 122.9 138 53.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 5.3e-26 122.1 87 70.1
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.2e-25 120.9 254 33.1
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 2.2e-24 116.7 90 64.4
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-23 114.0 271 31.0
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 3.2e-23 112.8 272 32.0
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.2e-23 111.7 271 31.0
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 6.3e-19 98.6 256 26.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 3.1e-18 96.3 129 45.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.2e-17 94.4 68 66.2
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.2e-17 94.4 68 66.2
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.5e-16 88.2 233 30.9
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.7e-14 83.2 123 45.5
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.0e-13 81.3 48 81.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 7.5e-12 75.1 233 25.8
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.3e-11 74.3 105 38.1
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.7e-11 72.8 54 61.1
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.7e-08 63.9 48 70.8
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.6e-06 56.2 66 40.9


User provided reference genes

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