Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1657 Ceratophyllum demersum HOM05D002793 ORTHO05D002965 3.1e-72 275.0 137 100.0
CDE05G1345 Ceratophyllum demersum HOM05D002793 ORTHO05D002965 1.7e-62 242.7 132 92.4
CDE02G0484 Ceratophyllum demersum HOM05D002793 ORTHO05D002965 1.5e-50 203.0 132 78.8
Gorai.009G332000 Gossypium raimondii HOM05D002793 ORTHO05D002965 1.2e-20 103.6 132 41.7
Gohir.A05G310200 Gossypium hirsutum HOM05D002793 ORTHO05D002965 1.6e-20 103.2 132 41.7
Gohir.D05G311000 Gossypium hirsutum HOM05D002793 ORTHO05D002965 2.1e-20 102.8 132 41.7
Duzib268G1080 Durio zibethinus HOM05D002793 ORTHO05D002965 6.1e-20 101.3 133 41.4
TAR629G0254 Trochodendron aralioides HOM05D002793 ORTHO05D002965 1.0e-19 100.5 132 43.2
CiPaw.05G107100 Carya illinoinensis HOM05D002793 ORTHO05D002965 2.3e-19 99.4 135 39.3
COL.COLO4_05010 Corchorus olitorius HOM05D002793 ORTHO05D002965 2.3e-19 99.4 133 40.6
QL03p051728 Quercus lobata HOM05D002793 ORTHO05D002965 3.0e-19 99.0 134 39.6
Thecc.02G201800 Theobroma cacao HOM05D002793 ORTHO05D002965 1.2e-18 97.1 133 42.1
CiPaw.06G105000 Carya illinoinensis HOM05D002793 ORTHO05D002965 7.5e-18 94.4 137 40.9
ClCG06G002060 Citrullus lanatus HOM05D002793 ORTHO05D002965 7.5e-18 94.4 133 40.6
PGR119G2529 Punica granatum HOM05D002793 ORTHO05D002965 1.3e-17 93.6 134 38.8
Haze_12447 Corylus avellana HOM05D002793 ORTHO05D002965 2.8e-17 92.4 136 41.9
DCAR_026448 Daucus carota HOM05D002793 ORTHO05D002965 2.8e-17 92.4 128 44.5
Gohir.D02G146600 Gossypium hirsutum HOM05D002793 ORTHO05D002965 4.8e-17 91.7 141 39.0
Gorai.005G164100 Gossypium raimondii HOM05D002793 ORTHO05D002965 4.8e-17 91.7 141 39.0
CsaV3_6G008130 Cucumis sativus L. HOM05D002793 ORTHO05D002965 6.3e-17 91.3 133 41.4
Nitab4.5_0000542g0010 Nicotiana tabacum HOM05D002793 ORTHO05D002965 6.3e-17 91.3 142 39.4
Sabra01G0042600 Salix brachista HOM05D002793 ORTHO05D002965 1.1e-16 90.5 142 38.0
Lalb_Chr02g0144551 Lupinus albus HOM05D002793 ORTHO05D002965 1.4e-16 90.1 134 38.8
Manes.12G008500 Manihot esculenta HOM05D002793 ORTHO05D002965 1.8e-16 89.7 144 38.2
Prupe.1G222800 Prunus persica HOM05D002793 ORTHO05D002965 2.4e-16 89.4 134 36.6
MD13G1122400 Malus domestica HOM05D002793 ORTHO05D002965 3.1e-16 89.0 135 37.0
Actinidia39798 Actinidia chinensis HOM05D002793 ORTHO05D002965 4.1e-16 88.6 144 41.0
Phvul.008G017100 Phaseolus vulgaris HOM05D002793 ORTHO05D002965 4.1e-16 88.6 141 38.3
VMungo1383G2953 Vigna mungo HOM05D002793 ORTHO05D002965 4.1e-16 88.6 131 37.4
Lj6A830G30 Lonicera japonica HOM05D002793 ORTHO05D002965 5.3e-16 88.2 142 37.3
Potri.003G168700 Populus trichocarpa HOM05D002793 ORTHO05D002965 1.2e-15 87.0 147 36.1
Glyma.18G284400 Glycine max HOM05D002793 ORTHO05D002965 1.6e-15 86.7 135 38.5
CANSAT01G0958 Cannabis sativa HOM05D002793 ORTHO05D002965 2.0e-15 86.3 138 39.1
Cpa.g.sc286.6 Carica papaya HOM05D002793 ORTHO05D002965 2.0e-15 86.3 130 38.5
Dinv11689 Davidia involucrata HOM05D002793 ORTHO05D002965 2.7e-15 85.9 142 38.7
MELO3C022322.2 Cucumis melo HOM05D002793 ORTHO05D002965 3.5e-15 85.5 101 45.5
Phvul.007G001200 Phaseolus vulgaris HOM05D002793 ORTHO05D002965 7.7e-15 84.3 134 36.6
Potri.001G059100 Populus trichocarpa HOM05D002793 ORTHO05D002965 7.7e-15 84.3 147 35.4
GSVIVG01010528001 Vitis vinifera HOM05D002793 ORTHO05D002965 7.7e-15 84.3 133 37.6
CSS0013139 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.3e-14 83.6 142 36.6
CSS0031398 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.3e-14 83.6 142 36.6
Solyc05g015880.3 Solanum lycopersicum HOM05D002793 ORTHO05D002965 1.3e-14 83.6 143 39.2
PGSC0003DMG401019811 Solanum tuberosum HOM05D002793 ORTHO05D002965 1.3e-14 83.6 143 39.2
Manes.13G009000 Manihot esculenta HOM05D002793 ORTHO05D002965 1.7e-14 83.2 147 38.1
Lj1g0015564 Lotus japonicus HOM05D002793 ORTHO05D002965 2.2e-14 82.8 148 37.2
MD17G1002300 Malus domestica HOM05D002793 ORTHO05D002965 2.9e-14 82.4 133 39.1
Rhsim12G0094800 Rhododendron simsii HOM05D002793 ORTHO05D002965 2.9e-14 82.4 134 36.6
Dinv25648 Davidia involucrata HOM05D002793 ORTHO05D002965 3.8e-14 82.0 140 37.1
Gohir.A03G124200 Gossypium hirsutum HOM05D002793 ORTHO05D002965 5.0e-14 81.6 135 37.0
THA.LOC104801635 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 5.0e-14 81.6 141 34.8
THA.LOC104801637 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 5.0e-14 81.6 141 34.8
THA.LOC104801639 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 5.0e-14 81.6 141 34.8
THA.LOC104804714 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 5.0e-14 81.6 141 34.8
THA.LOC104816114 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 5.0e-14 81.6 141 34.8
THA.LOC104816116 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 5.0e-14 81.6 141 34.8
Sed0027654 Sechium edule HOM05D002793 ORTHO05D002965 6.5e-14 81.3 101 43.6
Peaxi162Scf00128g01542 Petunia axillaris HOM05D002793 ORTHO05D002965 8.5e-14 80.9 137 38.7
CSS0004091 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.1e-13 80.5 141 38.3
Cc11_g17200 Coffea canephora HOM05D002793 ORTHO05D002965 1.5e-13 80.1 136 38.2
Glyma.02G097100 Glycine max HOM05D002793 ORTHO05D002965 1.5e-13 80.1 143 37.1
Lsat_1_v5_gn_3_31200 Lactuca sativa HOM05D002793 ORTHO05D002965 1.5e-13 80.1 140 35.0
Sabra03G0123600 Salix brachista HOM05D002793 ORTHO05D002965 1.5e-13 80.1 138 34.8
Glyma.10G298100 Glycine max HOM05D002793 ORTHO05D002965 1.9e-13 79.7 131 39.7
Nn3g16401 Nelumbo nucifera HOM05D002793 ORTHO05D002965 1.9e-13 79.7 141 37.6
Lalb_Chr10g0092031 Lupinus albus HOM05D002793 ORTHO05D002965 2.5e-13 79.3 138 39.1
arahy.Tifrunner.gnm1.ann1.BJT98M Arachis hypogaea HOM05D002793 ORTHO05D002965 3.2e-13 79.0 147 37.4
arahy.Tifrunner.gnm1.ann1.S8FHU4 Arachis hypogaea HOM05D002793 ORTHO05D002965 3.2e-13 79.0 147 37.4
Phvul.001G088600 Phaseolus vulgaris HOM05D002793 ORTHO05D002965 3.2e-13 79.0 140 36.4
Sed0009839 Sechium edule HOM05D002793 ORTHO05D002965 3.2e-13 79.0 132 37.9
Atru.chr11.2359 Acer truncatum HOM05D002793 ORTHO05D002965 4.2e-13 78.6 156 34.6
LjContig00470g0014947 Lotus japonicus HOM05D002793 ORTHO05D002965 4.2e-13 78.6 141 34.8
Sc04g0010290 Simmondsia chinensis HOM05D002793 ORTHO05D002965 5.5e-13 78.2 132 35.6
THA.LOC104825488 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 5.5e-13 78.2 138 34.1
Aqoxy5G03293 Aquilegia oxysepala HOM05D002793 ORTHO05D002965 7.2e-13 77.8 141 36.9
FAN07G0273 Fragaria x ananassa HOM05D002793 ORTHO05D002965 7.2e-13 77.8 141 34.0
MSTRG.484 Avicennia marina HOM05D002793 ORTHO05D002965 9.4e-13 77.4 137 35.8
ECA246G3465 Erigeron canadensis HOM05D002793 ORTHO05D002965 9.4e-13 77.4 141 34.8
HanXRQChr06g0174781 Helianthus annuus HOM05D002793 ORTHO05D002965 9.4e-13 77.4 141 34.0
TWI36G0224 Tripterygium wilfordii HOM05D002793 ORTHO05D002965 9.4e-13 77.4 143 35.7
Haze_14896 Corylus avellana HOM05D002793 ORTHO05D002965 1.2e-12 77.0 145 36.6
Eucgr.H04615 Eucalyptus grandis HOM05D002793 ORTHO05D002965 1.2e-12 77.0 138 35.5
Glyma.20G249200 Glycine max HOM05D002793 ORTHO05D002965 1.6e-12 76.6 132 38.6
Ciclev10031707m.g Citrus clementina HOM05D002793 ORTHO05D002965 2.1e-12 76.3 150 34.0
Glyma.19G094600 Glycine max HOM05D002793 ORTHO05D002965 2.1e-12 76.3 142 37.3
Dinv33324 Davidia involucrata HOM05D002793 ORTHO05D002965 4.7e-12 75.1 141 33.3
FvH4_4g23460 Fragaria vesca HOM05D002793 ORTHO05D002965 4.7e-12 75.1 141 33.3
FAN12G0240 Fragaria x ananassa HOM05D002793 ORTHO05D002965 4.7e-12 75.1 141 33.3
Hund25480 Selenicereus undatus HOM05D002793 ORTHO05D002965 4.7e-12 75.1 133 34.6
TPR.G2957 Trifolium pratense HOM05D002793 ORTHO05D002965 4.7e-12 75.1 147 33.3
RcHm_v2.0_Chr4g0429831 Rosa chinensis HOM05D002793 ORTHO05D002965 6.1e-12 74.7 141 33.3
TWI18G1253 Tripterygium wilfordii HOM05D002793 ORTHO05D002965 6.1e-12 74.7 145 35.2
Eucgr.B03523 Eucalyptus grandis HOM05D002793 ORTHO05D002965 8.0e-12 74.3 146 33.6
Psat3g185960 Pisum sativum HOM05D002793 ORTHO05D002965 1.4e-11 73.6 147 36.7
Actinidia30628 Actinidia chinensis HOM05D002793 ORTHO05D002965 2.3e-11 72.8 141 34.0
Glyma.16G054300 Glycine max HOM05D002793 ORTHO05D002965 2.3e-11 72.8 142 34.5
MBI11_g05335_MAGBIO Magnolia biondii HOM05D002793 ORTHO05D002965 3.0e-11 72.4 134 35.8
TPR.G8908 Trifolium pratense HOM05D002793 ORTHO05D002965 4.0e-11 72.0 142 32.4
vmacro16095 Vaccinium macrocarpon HOM05D002793 ORTHO05D002965 5.2e-11 71.6 182 31.3
FAN09G2893 Fragaria x ananassa HOM05D002793 ORTHO05D002965 6.8e-11 71.2 133 36.1
FAN02G2297 Fragaria x ananassa HOM05D002793 ORTHO05D002965 8.8e-11 70.9 138 37.7
PGR142G0558 Punica granatum HOM05D002793 ORTHO05D002965 8.8e-11 70.9 144 36.8
Medtr7g022360 Medicago truncatula HOM05D002793 ORTHO05D002965 1.2e-10 70.5 151 34.4
Sopen05g011570 Solanum pennellii HOM05D002793 ORTHO05D002965 1.5e-10 70.1 137 36.5
Gohir.D04G075300 Gossypium hirsutum HOM05D002793 ORTHO05D002965 2.0e-10 69.7 140 34.3
TWI60G1054 Tripterygium wilfordii HOM05D002793 ORTHO05D002965 2.0e-10 69.7 140 34.3
MELO3C032845.2 Cucumis melo HOM05D002793 ORTHO05D002965 3.4e-10 68.9 131 33.6
VMungo1383G2437 Vigna mungo HOM05D002793 ORTHO05D002965 3.4e-10 68.9 142 33.1
Ciclev10018081m.g Citrus clementina HOM05D002793 ORTHO05D002965 4.4e-10 68.6 142 34.5
FvH4_6g53810 Fragaria vesca HOM05D002793 ORTHO05D002965 7.5e-10 67.8 132 34.8
Hma1.2p1_0065F.1_g035100 Hydrangea macrophylla HOM05D002793 ORTHO05D002965 7.5e-10 67.8 142 33.1
Lj1g0014710 Lotus japonicus HOM05D002793 ORTHO05D002965 7.5e-10 67.8 140 33.6
Medtr3g085710 Medicago truncatula HOM05D002793 ORTHO05D002965 7.5e-10 67.8 144 31.2
MELO3C014898.2 Cucumis melo HOM05D002793 ORTHO05D002965 9.8e-10 67.4 142 36.6
PGR102G2389 Punica granatum HOM05D002793 ORTHO05D002965 1.3e-09 67.0 148 32.4
Gorai.012G084800 Gossypium raimondii HOM05D002793 ORTHO05D002965 1.7e-09 66.6 140 33.6
CsaV3_4G003020 Cucumis sativus L. HOM05D002793 ORTHO05D002965 2.2e-09 66.2 132 33.3
TPR.G8576 Trifolium pratense HOM05D002793 ORTHO05D002965 2.2e-09 66.2 142 33.1
arahy.Tifrunner.gnm1.ann1.QV3UQR Arachis hypogaea HOM05D002793 ORTHO05D002965 2.8e-09 65.9 140 33.6
Manes.11G086900 Manihot esculenta HOM05D002793 ORTHO05D002965 2.8e-09 65.9 132 34.8
unitig_749.g13313 Utricularia gibba HOM05D002793 ORTHO05D002965 3.7e-09 65.5 133 31.6
GSVIVG01033059001 Vitis vinifera HOM05D002793 ORTHO05D002965 3.7e-09 65.5 138 31.2
arahy.Tifrunner.gnm1.ann1.ZG4VZM Arachis hypogaea HOM05D002793 ORTHO05D002965 4.8e-09 65.1 140 33.6
CAN.G610.4 Capsicum annuum HOM05D002793 ORTHO05D002965 4.8e-09 65.1 139 34.5
Duzib147G0228 Durio zibethinus HOM05D002793 ORTHO05D002965 4.8e-09 65.1 145 32.4
CANSAT64G0260 Cannabis sativa HOM05D002793 ORTHO05D002965 6.3e-09 64.7 153 31.4
CsaV3_3G026890 Cucumis sativus L. HOM05D002793 ORTHO05D002965 6.3e-09 64.7 142 35.9
Medtr7g028590 Medicago truncatula HOM05D002793 ORTHO05D002965 6.3e-09 64.7 136 32.4
Actinidia30867 Actinidia chinensis HOM05D002793 ORTHO05D002965 8.3e-09 64.3 140 32.9
CSS0011475 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 8.3e-09 64.3 134 32.1
Lalb_Chr22g0360281 Lupinus albus HOM05D002793 ORTHO05D002965 8.3e-09 64.3 144 30.6
PSO017G2869 Papaver somniferum HOM05D002793 ORTHO05D002965 8.3e-09 64.3 163 31.9
COL.COLO4_13290 Corchorus olitorius HOM05D002793 ORTHO05D002965 1.1e-08 63.9 143 32.9
Gohir.A05G336800 Gossypium hirsutum HOM05D002793 ORTHO05D002965 1.1e-08 63.9 136 33.8
Oeu050736.1 Olea europaea HOM05D002793 ORTHO05D002965 1.1e-08 63.9 94 40.4
Sabra16G0209700 Salix brachista HOM05D002793 ORTHO05D002965 1.8e-08 63.2 147 29.9
Ah.03g135970 Amaranthus hybridus HOM05D002793 ORTHO05D002965 2.4e-08 62.8 137 32.1
Rhsim08G0041700 Rhododendron simsii HOM05D002793 ORTHO05D002965 2.4e-08 62.8 140 30.7
Manes.04G088700 Manihot esculenta HOM05D002793 ORTHO05D002965 4.1e-08 62.0 140 30.0
EL10Ac6g13537 Beta vulgaris HOM05D002793 ORTHO05D002965 5.4e-08 61.6 133 33.1
Thecc.04G040100 Theobroma cacao HOM05D002793 ORTHO05D002965 5.4e-08 61.6 142 32.4
Actinidia08054 Actinidia chinensis HOM05D002793 ORTHO05D002965 1.2e-07 60.5 102 39.2
CSS0006370 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.2e-07 60.5 109 35.8
CSS0019194 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.2e-07 60.5 109 35.8
CSS0027852 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.2e-07 60.5 109 35.8
CSS0030379 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.2e-07 60.5 109 35.8
Potri.001G327500 Populus trichocarpa HOM05D002793 ORTHO05D002965 1.6e-07 60.1 147 27.2
CSS0018455 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 2.0e-07 59.7 109 35.8
Nitab4.5_0000559g0300 Nicotiana tabacum HOM05D002793 ORTHO05D002965 2.0e-07 59.7 143 30.1
Lalb_Chr00c01g0403751 Lupinus albus HOM05D002793 ORTHO05D002965 2.7e-07 59.3 132 30.3
Nn4g22259 Nelumbo nucifera HOM05D002793 ORTHO05D002965 2.7e-07 59.3 142 34.5
CSS0047837 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 4.5e-07 58.5 108 33.3
PSO478G2968 Papaver somniferum HOM05D002793 ORTHO05D002965 5.9e-07 58.2 189 28.6
QL02p070893 Quercus lobata HOM05D002793 ORTHO05D002965 1.0e-06 57.4 110 38.2
Actinidia16924 Actinidia chinensis HOM05D002793 ORTHO05D002965 1.3e-06 57.0 140 29.3
Cc00_g14540 Coffea canephora HOM05D002793 ORTHO05D002965 1.7e-06 56.6 147 27.9
CDE06G1482 Ceratophyllum demersum HOM05D002793 ORTHO05D002965 3.8e-06 55.5 88 38.6
THA.LOC104821129 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 8.6e-06 54.3 136 31.6


User provided reference genes

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