Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 6.5e-67 257.3 134 100.0
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 8.0e-49 197.2 116 90.5
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 7.0e-37 157.5 104 77.9
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 2.0e-31 139.4 104 73.1
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 9.8e-31 137.1 113 66.4
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.2e-30 136.0 99 74.7
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.9e-30 135.6 111 66.7
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.9e-30 134.8 122 60.7
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 6.4e-30 134.4 107 70.1
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.1e-29 133.7 107 70.1
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 4.1e-29 131.7 124 62.1
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.0e-29 131.0 98 72.4
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 7.0e-29 131.0 126 62.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.6e-28 129.8 107 66.4
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 4.6e-28 128.3 100 71.0
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.8e-28 127.5 98 69.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 7.8e-28 127.5 118 62.7
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 7.8e-28 127.5 113 64.6
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.0e-27 127.1 121 58.7
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.0e-27 127.1 116 62.9
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 6.6e-27 124.4 124 57.3
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 8.6e-27 124.0 115 62.6
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-26 123.2 106 65.1
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.5e-26 122.5 112 61.6
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.5e-26 122.5 112 61.6
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 3.3e-26 122.1 138 56.5
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 5.6e-26 121.3 105 62.9
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.2e-25 120.2 114 58.8
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.2e-25 120.2 99 68.7
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.2e-25 120.2 115 60.9
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.6e-25 119.8 129 57.4
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.6e-25 119.8 132 55.3
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.6e-25 119.8 120 59.2
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.1e-25 119.4 109 63.3
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 2.8e-25 119.0 122 56.6
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.8e-25 119.0 131 55.7
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 3.6e-25 118.6 102 62.7
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.6e-25 118.6 69 82.6
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.6e-25 118.6 116 61.2
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 4.7e-25 118.2 114 60.5
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 4.7e-25 118.2 120 56.7
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.7e-25 118.2 114 58.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 6.2e-25 117.9 118 59.3
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 8.1e-25 117.5 113 61.1
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 8.1e-25 117.5 120 56.7
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 8.1e-25 117.5 121 57.0
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.1e-24 117.1 77 75.3
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.1e-24 117.1 121 57.0
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.1e-24 117.1 132 53.0
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.4e-24 116.7 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 3.1e-24 115.5 114 56.1
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 4.0e-24 115.2 115 58.3
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 5.2e-24 114.8 115 58.3
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 5.2e-24 114.8 113 60.2
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 8.9e-24 114.0 102 64.7
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 8.9e-24 114.0 102 64.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 8.9e-24 114.0 101 66.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.5e-23 113.2 106 63.2
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 2.0e-23 112.8 124 55.6
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 4.4e-23 111.7 99 63.6
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.4e-23 111.7 124 57.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 5.8e-23 111.3 132 52.3
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 7.5e-23 110.9 113 58.4
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 7.5e-23 110.9 123 52.8
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.3e-22 110.2 130 53.1
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-22 110.2 129 53.5
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.3e-22 110.2 129 53.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.3e-22 110.2 106 60.4
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.7e-22 109.8 109 58.7
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-22 109.4 124 55.6
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 2.2e-22 109.4 109 53.2
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.2e-22 109.4 119 57.1
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 4.9e-22 108.2 112 54.5
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.9e-22 108.2 106 59.4
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.1e-21 107.1 117 53.8
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.4e-21 106.7 113 55.8
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.4e-21 106.7 113 56.6
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.9e-21 106.3 108 58.3
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.9e-21 106.3 108 58.3
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.9e-21 106.3 108 58.3
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.9e-21 106.3 104 58.7
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.2e-21 105.5 103 57.3
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 4.1e-21 105.1 107 57.0
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 4.1e-21 105.1 98 59.2
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 9.2e-21 104.0 114 54.4
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 9.2e-21 104.0 112 54.5
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 3.5e-20 102.1 109 55.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 4.6e-20 101.7 103 61.2
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.6e-20 101.7 83 65.1
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 6.0e-20 101.3 126 49.2
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 6.0e-20 101.3 115 54.8
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 7.8e-20 100.9 117 51.3
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.0e-19 100.5 115 54.8
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.7e-19 99.8 104 57.7
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.3e-19 99.4 112 55.4
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 2.3e-19 99.4 81 64.2
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.9e-18 96.3 108 51.9
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 2.5e-18 95.9 126 49.2
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.3e-18 95.5 127 51.2
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 3.3e-18 95.5 113 52.2
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.6e-18 94.7 112 50.0
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.2e-17 93.6 109 55.0
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.6e-17 93.2 109 54.1
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.6e-17 93.2 109 54.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.1e-17 92.8 109 54.1
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.8e-17 92.4 87 56.3
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 3.6e-17 92.0 114 50.9
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 4.7e-17 91.7 77 59.7
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 6.2e-17 91.3 72 72.2
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 1.1e-16 90.5 119 52.1
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.4e-16 90.1 109 53.2
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.8e-16 89.7 74 62.2
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.1e-16 89.0 132 44.7
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 3.1e-16 89.0 114 47.4
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.2e-16 88.2 122 45.9
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 5.2e-16 88.2 114 46.5
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 8.9e-16 87.4 164 39.6
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 9.9e-15 84.0 83 56.6
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.2e-14 82.8 119 42.0
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 3.7e-14 82.0 112 47.3
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 4.9e-14 81.6 72 62.5
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.6e-12 76.6 127 46.5
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.1e-12 76.3 99 50.5
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.7e-12 75.9 54 68.5
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 1.0e-11 73.9 73 61.6
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.9e-11 72.0 60 60.0
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.6e-11 71.2 67 59.7
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.6e-11 71.2 67 59.7
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.6e-11 71.2 67 59.7
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 8.6e-11 70.9 111 45.0
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.5e-10 70.1 44 77.3
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 2.5e-10 69.3 58 58.6
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 7.3e-10 67.8 44 75.0
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.6e-09 65.5 45 71.1
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.4e-08 63.5 39 76.9
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.4e-08 62.8 166 37.3
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 4.0e-08 62.0 57 57.9
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.7e-06 56.6 59 61.0
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 2.9e-06 55.8 59 45.8
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 8.4e-06 54.3 58 53.4


User provided reference genes

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