Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 0.0e+00 1208.0 632 100.0
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.1e-208 729.6 623 61.5
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.1e-196 688.7 628 58.8
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.9e-193 679.9 632 56.5
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.8e-192 676.0 627 57.7
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 6.2e-192 674.9 627 56.1
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.2e-187 660.6 622 56.1
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 8.6e-186 654.4 622 56.9
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.3e-185 652.5 624 54.8
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 3.3e-185 652.5 623 54.7
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 2.8e-184 649.4 623 55.5
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.4e-183 646.4 623 55.2
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 3.1e-183 646.0 623 54.7
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.8e-181 639.0 623 54.3
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.1e-180 637.5 623 55.2
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.4e-180 637.1 621 54.1
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.2e-180 636.0 624 54.2
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.2e-180 636.0 623 54.1
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 4.1e-180 635.6 624 54.0
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-179 633.6 624 55.1
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 2.1e-179 633.3 628 53.8
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.3e-178 629.8 624 53.5
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.3e-178 629.8 618 53.6
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.6e-178 627.9 625 53.3
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.6e-176 623.6 652 52.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 3.6e-176 622.5 623 52.2
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 4.7e-176 622.1 632 52.7
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.1e-175 620.9 625 53.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 4.0e-175 619.0 617 52.0
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 9.0e-175 617.8 623 53.3
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 9.0e-175 617.8 619 53.5
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.2e-174 617.5 619 53.0
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 5.8e-174 615.1 623 53.0
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 2.9e-173 612.8 625 51.4
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.4e-172 610.5 620 53.4
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.2e-172 609.4 623 51.8
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.2e-171 607.4 628 51.6
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 4.6e-171 605.5 611 53.7
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 4.6e-171 605.5 637 52.4
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-170 604.0 617 53.6
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.0e-170 602.8 627 51.0
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 8.7e-170 601.3 618 51.9
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 1.5e-169 600.5 616 53.2
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.9e-169 600.1 616 52.3
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 9.6e-169 597.8 620 53.7
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 9.6e-169 597.8 658 51.4
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 9.6e-169 597.8 630 51.7
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-168 597.4 620 53.5
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.3e-168 597.4 620 53.5
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.6e-168 595.9 618 51.9
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 8.1e-168 594.7 618 52.6
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.9e-167 591.7 627 51.2
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 5.8e-166 588.6 619 52.7
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 7.6e-166 588.2 616 51.9
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 1.7e-165 587.0 618 51.6
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 3.8e-165 585.9 618 51.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 6.4e-165 585.1 628 52.1
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.4e-164 583.2 579 54.4
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 7.1e-164 581.6 624 49.5
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 9.3e-164 581.3 567 54.0
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 3.5e-163 579.3 565 54.7
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 4.6e-163 578.9 662 48.9
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 6.0e-163 578.6 622 50.3
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 7.9e-163 578.2 616 51.0
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.0e-162 577.8 616 51.6
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 2.8e-160 569.7 617 50.7
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 6.9e-159 565.1 627 49.3
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 6.9e-159 565.1 640 49.2
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 3.4e-158 562.8 632 49.4
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.3e-157 560.8 615 50.4
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.2e-157 560.1 629 50.4
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 4.9e-157 558.9 518 57.5
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.4e-156 557.4 620 48.7
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.2e-156 555.8 505 58.0
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 5.5e-156 555.4 505 58.0
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 6.7e-154 548.5 584 51.2
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.3e-153 546.2 601 48.8
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 5.3e-151 538.9 626 46.6
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 9.0e-151 538.1 627 48.0
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 2.6e-150 536.6 529 54.3
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 2.2e-149 533.5 554 52.2
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.9e-148 530.4 661 46.3
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-146 524.2 620 46.3
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 3.0e-146 523.1 569 51.1
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 3.9e-146 522.7 469 59.3
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 6.3e-144 515.4 513 54.6
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 4.5e-142 509.2 628 47.8
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.3e-138 496.9 623 46.5
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 3.0e-138 496.5 534 51.3
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.7e-136 490.7 529 48.6
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.3e-133 481.1 595 47.7
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.5e-133 478.8 557 47.4
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 8.8e-130 468.4 440 56.4
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 5.3e-127 459.1 464 53.7
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 4.2e-124 449.5 649 41.6
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 3.5e-118 429.9 621 43.3
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 6.3e-112 409.1 476 47.9
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.0e-105 387.5 388 51.3
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.4e-103 380.6 583 41.7
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 6.8e-98 362.5 355 54.1
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.4e-95 352.8 631 34.5
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 9.5e-84 315.5 618 32.8
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 2.6e-81 307.4 626 35.0
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 2.4e-79 300.8 379 49.6
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 7.8e-78 295.8 621 31.7
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 2.3e-77 294.3 507 37.1
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 9.2e-63 245.7 368 43.8
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 9.0e-58 229.2 520 34.6
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 9.0e-58 229.2 520 34.6
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 6.4e-56 223.0 374 39.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.9e-55 221.5 262 46.2
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.9e-44 184.9 379 31.7
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 9.3e-39 166.0 278 38.8
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.7e-38 164.5 197 44.7
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 4.6e-38 163.7 278 38.5
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.7e-35 154.1 130 63.8
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 8.2e-35 152.9 142 54.2
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.3e-34 150.2 143 56.6
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.4e-31 142.1 218 43.1
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.3e-28 131.0 366 31.4
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.8e-27 127.9 327 31.2
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 3.7e-27 127.5 154 47.4
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.8e-26 125.2 164 42.7
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 3.1e-26 124.4 145 46.2
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 6.9e-26 123.2 154 45.5
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 6.5e-24 116.7 165 37.6
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.6e-22 110.9 398 29.4
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.5e-20 105.5 150 42.0
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 5.7e-20 103.6 118 55.9
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.9e-16 91.3 55 78.2
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.2e-15 87.8 136 33.1
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 9.4e-15 86.3 56 71.4
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 1.0e-13 82.8 89 48.3
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.3e-11 75.9 82 47.6
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 6.3e-11 73.6 117 35.9
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 7.0e-10 70.1 115 35.7
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 2.6e-09 68.2 41 78.0
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.7e-09 66.6 69 49.3
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 1.6e-06 58.9 71 43.7
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.7e-06 57.4 72 44.4
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 8.0e-06 56.6 47 55.3


User provided reference genes

Program Settings