Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.6e-311 1070.5 561 100.0
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.0e-254 883.2 520 86.5
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 1.3e-249 866.3 516 84.5
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 9.5e-245 850.1 519 83.2
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.1e-244 849.0 520 82.1
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 8.1e-244 847.0 507 84.4
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-243 846.7 519 82.9
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 1.2e-242 843.2 520 82.5
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 7.5e-242 840.5 520 82.3
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.2e-241 839.0 520 82.1
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.9e-241 838.6 520 82.1
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 4.9e-241 837.8 524 81.5
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 6.4e-241 837.4 494 86.2
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 3.2e-240 835.1 519 81.5
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 4.1e-240 834.7 498 83.5
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 6.0e-239 830.9 520 81.2
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.3e-238 828.9 498 83.5
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 3.9e-238 828.2 516 80.4
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.1e-237 826.6 524 80.3
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.5e-237 826.2 518 80.1
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.5e-237 826.2 523 79.3
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 5.6e-237 824.3 516 79.7
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.2e-236 823.2 493 83.2
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.6e-236 822.8 526 79.5
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 3.6e-236 821.6 516 80.4
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.1e-235 820.1 516 80.0
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.1e-235 820.1 516 79.1
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 3.1e-235 818.5 536 78.7
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 5.2e-235 817.8 522 80.1
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 6.8e-235 817.4 516 79.5
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 3.4e-234 815.1 516 79.7
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.3e-233 813.1 511 81.2
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.3e-233 813.1 498 81.3
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 1.7e-233 812.8 516 79.3
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 2.9e-233 812.0 516 79.1
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.9e-233 812.0 540 78.3
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.4e-232 809.7 519 78.6
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 2.7e-231 805.4 536 76.3
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 1.3e-230 803.1 495 80.6
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.7e-230 802.7 527 78.7
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.7e-230 802.7 532 77.3
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 5.1e-230 801.2 528 77.1
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.1e-229 800.0 528 77.1
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.5e-229 799.7 540 75.7
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.9e-229 799.3 528 77.1
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 4.0e-227 791.6 492 79.9
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.4e-224 783.1 517 76.8
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 4.2e-224 781.6 518 76.6
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 9.3e-224 780.4 519 74.2
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 4.6e-223 778.1 513 77.0
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.0e-222 776.9 532 74.8
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 1.3e-222 776.5 503 77.9
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 8.7e-222 773.9 514 76.8
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 4.3e-221 771.5 493 77.3
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 5.6e-221 771.2 498 77.1
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 5.6e-221 771.2 528 74.1
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.3e-220 770.0 501 76.6
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.6e-220 769.6 492 77.2
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 3.6e-220 768.5 495 77.2
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.8e-219 766.1 498 76.9
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.2e-218 763.5 531 74.6
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 1.5e-218 763.1 515 75.5
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 3.4e-218 761.9 522 75.5
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 9.9e-218 760.4 518 75.3
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.4e-216 756.5 498 76.1
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 2.4e-216 755.7 524 73.1
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.4e-216 755.7 515 75.5
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.4e-216 755.7 518 75.1
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 5.4e-216 754.6 620 66.1
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 9.3e-216 753.8 518 74.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.3e-214 749.2 535 72.1
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 3.0e-214 748.8 497 76.9
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 3.9e-214 748.4 555 69.7
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 3.9e-214 748.4 501 77.2
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 3.9e-214 748.4 513 74.9
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 6.6e-214 747.7 500 77.4
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.9e-213 746.1 540 70.9
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 3.3e-213 745.3 496 77.0
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 4.3e-213 745.0 627 65.1
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 2.1e-212 742.7 516 73.8
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 2.4e-211 739.2 466 80.5
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 6.4e-209 731.1 529 71.8
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 3.2e-208 728.8 497 76.1
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 6.2e-204 714.5 528 70.1
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 4.6e-199 698.4 520 69.4
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.3e-198 696.8 498 69.9
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.9e-197 693.0 618 62.6
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.1e-196 689.5 518 69.1
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 3.7e-196 688.7 570 64.6
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 5.3e-195 684.9 515 70.3
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.7e-193 679.9 426 81.5
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.5e-189 666.8 520 68.3
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 5.3e-187 658.3 455 75.4
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 9.0e-187 657.5 490 66.5
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 9.0e-187 657.5 490 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 3.7e-180 635.6 477 67.7
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 3.4e-178 629.0 400 80.2
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 2.9e-177 625.9 465 71.6
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.3e-169 600.5 514 59.7
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.0e-161 574.3 472 61.2
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 1.5e-157 560.5 368 77.2
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 5.0e-153 545.4 364 75.5
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 2.1e-151 540.0 353 76.2
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 2.4e-147 526.6 336 79.2
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.2e-130 471.1 330 74.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 2.0e-117 427.2 448 56.2
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.2e-116 423.7 304 73.0
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.1e-115 419.5 243 85.6
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 6.0e-114 415.6 511 45.8
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.2e-109 401.4 334 69.5
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 2.3e-105 387.1 492 44.5
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.0e-101 374.0 240 77.9
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.1e-91 341.7 485 40.6
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 4.5e-69 266.5 167 78.4
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 3.0e-57 227.3 495 36.6
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 9.4e-51 205.7 242 51.2
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 9.4e-51 205.7 504 32.9
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 4.7e-50 203.4 478 35.1
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 8.2e-47 192.6 118 83.1
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 3.0e-41 174.1 456 33.8
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 7.5e-40 169.5 281 42.7
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.3e-39 168.7 129 66.7
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 2.3e-36 157.9 477 31.9
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 6.1e-34 149.8 452 32.5
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 7.0e-30 136.3 331 36.0
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 3.5e-29 134.0 86 75.6
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 7.8e-29 132.9 294 35.0
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 5.0e-28 130.2 292 37.3
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 5.0e-28 130.2 277 38.6
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 3.4e-24 117.5 355 33.0
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 4.4e-24 117.1 220 41.4
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.3e-23 115.5 275 31.6
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 7.0e-22 109.8 220 39.5
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 3.0e-20 104.4 306 29.4
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 5.0e-20 103.6 360 30.6
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 6.6e-20 103.2 197 42.1
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-19 102.4 208 40.4
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-19 101.3 156 43.6
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 3.3e-19 100.9 419 29.8
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 9.5e-19 99.4 67 68.7
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 1.2e-18 99.0 239 30.5
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.6e-18 98.6 74 62.2
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 2.1e-18 98.2 398 29.9
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 8.0e-18 96.3 156 42.3
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 4.9e-15 87.0 327 29.4
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 7.0e-14 83.2 244 32.8
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-11 75.1 167 36.5
Pp3c24_2440 Physcomitrium patens HOM05D004787 ORTHO05D313483 4.9e-07 60.5 75 45.3
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 3.2e-06 57.8 50 54.0
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 9.2e-06 56.2 103 38.8


User provided reference genes

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