Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1329 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 4.5e-124 448.0 232 100.0
CDE02G1583 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 9.9e-71 270.8 169 87.6
Nn1g07428 Nelumbo nucifera HOM05D003543 ORTHO05D004112 4.9e-30 135.6 178 52.8
TAR629G3525 Trochodendron aralioides HOM05D003543 ORTHO05D004112 3.0e-27 126.3 179 48.0
Actinidia02307 Actinidia chinensis HOM05D003543 ORTHO05D004112 5.1e-27 125.6 161 49.7
Thecc.06G235100 Theobroma cacao HOM05D003543 ORTHO05D004112 2.5e-26 123.2 179 46.4
GSVIVG01006098001 Vitis vinifera HOM05D003543 ORTHO05D004112 2.5e-26 123.2 115 65.2
Dinv05019 Davidia involucrata HOM05D003543 ORTHO05D004112 3.3e-26 122.9 162 52.5
Nn1g03263 Nelumbo nucifera HOM05D003543 ORTHO05D004112 5.7e-26 122.1 187 47.1
Duzib192G0760 Durio zibethinus HOM05D003543 ORTHO05D004112 2.2e-25 120.2 180 47.2
Ciclev10018015m.g Citrus clementina HOM05D003543 ORTHO05D004112 6.3e-25 118.6 183 45.4
PSO541G5465 Papaver somniferum HOM05D003543 ORTHO05D004112 1.4e-24 117.5 173 49.1
Lj6g0020811 Lotus japonicus HOM05D003543 ORTHO05D004112 1.8e-24 117.1 162 47.5
Gohir.D06G161100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 2.4e-24 116.7 180 45.6
Duzib235G1522 Durio zibethinus HOM05D003543 ORTHO05D004112 3.1e-24 116.3 180 44.4
TAR631G0001 Trochodendron aralioides HOM05D003543 ORTHO05D004112 4.1e-24 115.9 161 47.8
Glyma.09G011300 Glycine max HOM05D003543 ORTHO05D004112 5.3e-24 115.5 164 45.1
Gorai.010G188000 Gossypium raimondii HOM05D003543 ORTHO05D004112 5.3e-24 115.5 180 45.0
TAR626G1558 Trochodendron aralioides HOM05D003543 ORTHO05D004112 5.3e-24 115.5 180 46.7
Gohir.A06G154400 Gossypium hirsutum HOM05D003543 ORTHO05D004112 6.9e-24 115.2 182 44.0
Hma1.2p1_0657F.1_g197030 Hydrangea macrophylla HOM05D003543 ORTHO05D004112 6.9e-24 115.2 178 47.8
CsaV3_6G048440 Cucumis sativus L. HOM05D003543 ORTHO05D004112 9.0e-24 114.8 176 45.5
Glyma.15G115800 Glycine max HOM05D003543 ORTHO05D004112 9.0e-24 114.8 164 45.7
Cpa.g.sc75.99 Carica papaya HOM05D003543 ORTHO05D004112 1.2e-23 114.4 177 44.1
COL.COLO4_31904 Corchorus olitorius HOM05D003543 ORTHO05D004112 1.2e-23 114.4 182 43.4
Manes.08G070984 Manihot esculenta HOM05D003543 ORTHO05D004112 1.2e-23 114.4 184 46.2
Atru.chr1.2368 Acer truncatum HOM05D003543 ORTHO05D004112 1.5e-23 114.0 168 45.2
MELO3C007441.2 Cucumis melo HOM05D003543 ORTHO05D004112 1.5e-23 114.0 176 45.5
Dinv32066 Davidia involucrata HOM05D003543 ORTHO05D004112 1.5e-23 114.0 162 49.4
MD05G1359600 Malus domestica HOM05D003543 ORTHO05D004112 1.5e-23 114.0 165 47.9
TWI63G1747 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 1.5e-23 114.0 174 42.5
ClCG01G021420 Citrullus lanatus HOM05D003543 ORTHO05D004112 2.0e-23 113.6 177 44.6
Lj1A1241T70 Lonicera japonica HOM05D003543 ORTHO05D004112 3.4e-23 112.8 177 42.9
Phvul.006G142100 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 3.4e-23 112.8 170 42.9
Sed0004311 Sechium edule HOM05D003543 ORTHO05D004112 3.4e-23 112.8 174 45.4
CSS0010074 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 7.6e-23 111.7 164 45.1
Ca_00736_v3 Cicer arietinum L. HOM05D003543 ORTHO05D004112 1.0e-22 111.3 177 41.8
MD10G1335100 Malus domestica HOM05D003543 ORTHO05D004112 1.0e-22 111.3 165 47.3
PSO675G9394 Papaver somniferum HOM05D003543 ORTHO05D004112 1.0e-22 111.3 173 46.8
Gohir.D05G178100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 1.3e-22 110.9 169 44.4
Prupe.4G008500 Prunus persica HOM05D003543 ORTHO05D004112 1.3e-22 110.9 174 47.1
Psat1g174720 Pisum sativum HOM05D003543 ORTHO05D004112 2.9e-22 109.8 164 44.5
VMungo0540G1194 Vigna mungo HOM05D003543 ORTHO05D004112 2.9e-22 109.8 170 42.4
CSS0034148 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 3.8e-22 109.4 161 44.7
Lj2A260T84 Lonicera japonica HOM05D003543 ORTHO05D004112 3.8e-22 109.4 156 46.2
Gorai.009G183500 Gossypium raimondii HOM05D003543 ORTHO05D004112 5.0e-22 109.0 169 43.8
FAN21G0242 Fragaria x ananassa HOM05D003543 ORTHO05D004112 1.4e-21 107.5 171 46.2
FAN25G1985 Fragaria x ananassa HOM05D003543 ORTHO05D004112 1.4e-21 107.5 170 44.1
CANSAT56G0448 Cannabis sativa HOM05D003543 ORTHO05D004112 2.5e-21 106.7 162 46.3
Gohir.A05G175100 Gossypium hirsutum HOM05D003543 ORTHO05D004112 3.2e-21 106.3 165 45.5
CSS0020081 Camellia sinensis var. sinensis HOM05D003543 ORTHO05D004112 4.2e-21 105.9 161 45.3
FvH4_3g00770 Fragaria vesca HOM05D003543 ORTHO05D004112 7.2e-21 105.1 171 45.6
Lalb_Chr18g0057071 Lupinus albus HOM05D003543 ORTHO05D004112 9.4e-21 104.8 184 42.9
QL05p069094 Quercus lobata HOM05D003543 ORTHO05D004112 9.4e-21 104.8 179 44.1
RcHm_v2.0_Chr5g0001011 Rosa chinensis HOM05D003543 ORTHO05D004112 9.4e-21 104.8 172 45.3
Duzib160G0009 Durio zibethinus HOM05D003543 ORTHO05D004112 1.2e-20 104.4 179 43.0
Migut.M01414 Erythranthe guttata HOM05D003543 ORTHO05D004112 1.2e-20 104.4 158 44.3
Sed0014537 Sechium edule HOM05D003543 ORTHO05D004112 1.2e-20 104.4 168 44.6
QL05p068721 Quercus lobata HOM05D003543 ORTHO05D004112 1.6e-20 104.0 179 44.1
Eucgr.D01428 Eucalyptus grandis HOM05D003543 ORTHO05D004112 2.1e-20 103.6 191 40.8
PGR004G1420 Punica granatum HOM05D003543 ORTHO05D004112 2.1e-20 103.6 187 40.1
TPR.G10581 Trifolium pratense HOM05D003543 ORTHO05D004112 2.1e-20 103.6 161 42.9
Rhsim13G0144100 Rhododendron simsii HOM05D003543 ORTHO05D004112 2.7e-20 103.2 165 44.2
arahy.Tifrunner.gnm1.ann1.09PW0C Arachis hypogaea HOM05D003543 ORTHO05D004112 4.6e-20 102.4 167 41.9
arahy.Tifrunner.gnm1.ann1.ZLF8NQ Arachis hypogaea HOM05D003543 ORTHO05D004112 4.6e-20 102.4 167 41.9
SalBow8G1766 Salvia bowleyana HOM05D003543 ORTHO05D004112 7.9e-20 101.7 161 42.2
vmacro03632 Vaccinium macrocarpon HOM05D003543 ORTHO05D004112 1.0e-19 101.3 183 41.0
MSTRG.7156 Avicennia marina HOM05D003543 ORTHO05D004112 1.8e-19 100.5 160 44.4
BraA01t02016Z Brassica rapa HOM05D003543 ORTHO05D004112 1.8e-19 100.5 168 44.0
Medtr2g026130 Medicago truncatula HOM05D003543 ORTHO05D004112 1.8e-19 100.5 169 43.8
A01p21010 Brassica napus HOM05D003543 ORTHO05D004112 3.0e-19 99.8 168 44.0
CARHR222890 Cardamine hirsuta HOM05D003543 ORTHO05D004112 3.9e-19 99.4 173 43.9
Oeu022953.1 Olea europaea HOM05D003543 ORTHO05D004112 3.9e-19 99.4 162 45.1
Aqoxy4G02200 Aquilegia oxysepala HOM05D003543 ORTHO05D004112 5.1e-19 99.0 167 41.9
THA.LOC104813330 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 5.1e-19 99.0 170 44.1
BcaC09g50355 Brassica carinata HOM05D003543 ORTHO05D004112 8.8e-19 98.2 168 43.5
Sp7g15040 Schrenkiella parvula HOM05D003543 ORTHO05D004112 1.1e-18 97.8 172 41.9
DCAR_004899 Daucus carota HOM05D003543 ORTHO05D004112 2.5e-18 96.7 161 44.7
Thhalv10025098m.g Eutrema salsugineum HOM05D003543 ORTHO05D004112 2.5e-18 96.7 173 43.9
Oeu002770.1 Olea europaea HOM05D003543 ORTHO05D004112 2.5e-18 96.7 157 45.9
PSO541G0019 Papaver somniferum HOM05D003543 ORTHO05D004112 2.5e-18 96.7 160 43.8
Aa31LG2G12560 Aethionema arabicum HOM05D003543 ORTHO05D004112 5.7e-18 95.5 171 42.7
PGSC0003DMG400013286 Solanum tuberosum HOM05D003543 ORTHO05D004112 5.7e-18 95.5 160 41.2
BcaNung00189 Brassica carinata HOM05D003543 ORTHO05D004112 9.7e-18 94.7 170 42.9
Nitab4.5_0003626g0080 Nicotiana tabacum HOM05D003543 ORTHO05D004112 9.7e-18 94.7 158 41.1
PSO781G0286 Papaver somniferum HOM05D003543 ORTHO05D004112 9.7e-18 94.7 163 42.3
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 9.7e-18 94.7 164 42.7
Peaxi162Scf00352g00096 Petunia axillaris HOM05D003543 ORTHO05D004112 1.3e-17 94.4 159 42.1
TWI38G1278 Tripterygium wilfordii HOM05D003543 ORTHO05D004112 1.3e-17 94.4 147 44.9
C01p26290 Brassica napus HOM05D003543 ORTHO05D004112 1.7e-17 94.0 168 44.0
BolC1t02576H Brassica oleracea HOM05D003543 ORTHO05D004112 1.7e-17 94.0 168 44.0
Nitab4.5_0000143g0100 Nicotiana tabacum HOM05D003543 ORTHO05D004112 2.2e-17 93.6 157 40.1
Solyc11g012440.1 Solanum lycopersicum HOM05D003543 ORTHO05D004112 2.2e-17 93.6 160 41.9
SGA_v2.0_scaffold7G03732 Striga asiatica HOM05D003543 ORTHO05D004112 2.2e-17 93.6 161 42.2
CiPaw.10G079000 Carya illinoinensis HOM05D003543 ORTHO05D004112 2.8e-17 93.2 179 42.5
Aa31LG9G12240 Aethionema arabicum HOM05D003543 ORTHO05D004112 3.7e-17 92.8 171 41.5
MSTRG.16032 Avicennia marina HOM05D003543 ORTHO05D004112 3.7e-17 92.8 163 42.3
Lj4A116T83 Lonicera japonica HOM05D000952 ORTHO05D000757 6.3e-17 92.0 125 47.2
Sopen11g007180 Solanum pennellii HOM05D003543 ORTHO05D004112 6.3e-17 92.0 160 41.2
HanXRQChr16g0517001 Helianthus annuus HOM05D003543 ORTHO05D004112 8.2e-17 91.7 167 43.1
THA.LOC104815484 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 8.2e-17 91.7 174 42.5
BcaNung02874 Brassica carinata HOM05D003543 ORTHO05D004112 1.1e-16 91.3 177 40.7
C07p47940 Brassica napus HOM05D003543 ORTHO05D004112 1.1e-16 91.3 177 40.7
CiPaw.09G104000 Carya illinoinensis HOM05D003543 ORTHO05D004112 1.4e-16 90.9 179 44.1
Lsat_1_v5_gn_4_63420 Lactuca sativa HOM05D003543 ORTHO05D004112 1.4e-16 90.9 170 41.8
Oeu030109.1 Olea europaea HOM05D003543 ORTHO05D004112 1.4e-16 90.9 157 41.4
Oeu047063.1 Olea europaea HOM05D003543 ORTHO05D004112 1.4e-16 90.9 157 41.4
BolC7t45317H Brassica oleracea HOM05D003543 ORTHO05D004112 1.8e-16 90.5 177 40.7
Sopen04g006940 Solanum pennellii HOM05D003543 ORTHO05D004112 1.8e-16 90.5 159 42.8
Migut.H01613 Erythranthe guttata HOM05D003543 ORTHO05D004112 2.4e-16 90.1 159 41.5
Lalb_Chr20g0119331 Lupinus albus HOM05D003543 ORTHO05D004112 2.4e-16 90.1 175 37.1
SGA_v2.0_scaffold7G03734 Striga asiatica HOM05D003543 ORTHO05D004112 2.4e-16 90.1 153 43.1
BraA03t14083Z Brassica rapa HOM05D003543 ORTHO05D004112 3.1e-16 89.7 164 41.5
ECA234G1693 Erigeron canadensis HOM05D003543 ORTHO05D004112 4.1e-16 89.4 168 42.3
Lsat_1_v5_gn_7_13800 Lactuca sativa HOM05D003543 ORTHO05D004112 5.3e-16 89.0 173 40.5
PGR042G2126 Punica granatum HOM05D003543 ORTHO05D004112 6.9e-16 88.6 177 39.5
PGSC0003DMG400023602 Solanum tuberosum HOM05D003543 ORTHO05D004112 6.9e-16 88.6 159 43.4
Haze_06957 Corylus avellana HOM05D003543 ORTHO05D004112 9.1e-16 88.2 184 41.3
Solyc04g014810.3 Solanum lycopersicum HOM05D003543 ORTHO05D004112 9.1e-16 88.2 153 41.8
A03p49880 Brassica napus HOM05D003543 ORTHO05D004112 1.5e-15 87.4 164 40.9
Sabra16G0014300 Salix brachista HOM05D003543 ORTHO05D004112 2.0e-15 87.0 179 40.8
EL10Ac8g20219 Beta vulgaris HOM05D003543 ORTHO05D004112 4.5e-15 85.9 170 40.6
MBI16_g42305_MAGBIO Magnolia biondii HOM05D003543 ORTHO05D004112 5.9e-15 85.5 154 40.9
Potri.016G010800 Populus trichocarpa HOM05D003543 ORTHO05D004112 5.9e-15 85.5 183 41.0
CAN.G696.20 Capsicum annuum HOM05D003543 ORTHO05D004112 7.7e-15 85.1 160 41.9
MD07G1107900 Malus domestica HOM05D003543 ORTHO05D004112 7.7e-15 85.1 120 49.2
BcaC06g33483 Brassica carinata HOM05D003543 ORTHO05D004112 3.8e-14 82.8 163 40.5
Actinidia04652 Actinidia chinensis HOM05D003543 ORTHO05D004112 5.0e-14 82.4 120 44.2
Cfa000083 Carpinus fangiana HOM05D003543 ORTHO05D004112 5.0e-14 82.4 179 41.3
HPP92_006094 Vanilla planifolia HOM05D003543 ORTHO05D004112 6.5e-14 82.0 175 38.9
Nitab4.5_0004646g0090 Nicotiana tabacum HOM05D003543 ORTHO05D004112 8.5e-14 81.6 101 51.5
unitig_32.g11370 Utricularia gibba HOM05D003543 ORTHO05D004112 8.5e-14 81.6 164 38.4
HanXRQChr17g0559481 Helianthus annuus HOM05D003543 ORTHO05D004112 1.1e-13 81.3 174 39.1
Phvul.003G084700 Phaseolus vulgaris HOM05D003543 ORTHO05D004112 1.4e-13 80.9 161 40.4
VMungo1215G1690 Vigna mungo HOM05D003543 ORTHO05D004112 1.4e-13 80.9 160 40.0
Ah.09g234170 Amaranthus hybridus HOM05D003543 ORTHO05D004112 1.9e-13 80.5 162 40.7
unitig_748.g7602 Utricularia gibba HOM05D003543 ORTHO05D004112 1.9e-13 80.5 163 39.3
Sc05g0009680 Simmondsia chinensis HOM05D003543 ORTHO05D004112 7.2e-13 78.6 180 38.9
SGA_v2.0_scaffold89G27513 Striga asiatica HOM05D003543 ORTHO05D004112 9.4e-13 78.2 155 39.4
HanXRQChr14g0451341 Helianthus annuus HOM05D003543 ORTHO05D004112 1.2e-12 77.8 164 40.9
Cc09_g00700 Coffea canephora HOM05D003543 ORTHO05D004112 2.1e-12 77.0 163 40.5
MSTRG.14606 Avicennia marina HOM05D003543 ORTHO05D004112 4.7e-12 75.9 162 36.4
Glyma.07G266400 Glycine max HOM05D003543 ORTHO05D004112 4.7e-12 75.9 153 40.5
AT4G16490 Arabidopsis thaliana HOM05D003543 ORTHO05D004112 6.1e-12 75.5 174 39.7
Carub.0007s2501 Capsella rubella HOM05D003543 ORTHO05D004112 7.9e-12 75.1 170 38.8
Ah.14g087540 Amaranthus hybridus HOM05D003543 ORTHO05D004112 1.0e-11 74.7 168 37.5
HanXRQChr09g0238241 Helianthus annuus HOM05D003543 ORTHO05D004112 1.0e-11 74.7 171 37.4
AL7G38470 Arabidopsis lyrata HOM05D003543 ORTHO05D004112 1.4e-11 74.3 174 39.1
Glyma.17G007900 Glycine max HOM05D003543 ORTHO05D004112 1.4e-11 74.3 161 39.1
Sabra06G0010600 Salix brachista HOM05D003543 ORTHO05D004112 1.8e-11 73.9 191 36.6
Potri.006G015100 Populus trichocarpa HOM05D003543 ORTHO05D004112 3.0e-11 73.2 191 36.1
HanXRQChr04g0094851 Helianthus annuus HOM05D003543 ORTHO05D004112 3.9e-11 72.8 174 38.5
CAN.G1263.22 Capsicum annuum HOM05D003543 ORTHO05D004112 1.5e-10 70.9 142 39.4
Nitab4.5_0001109g0090 Nicotiana tabacum HOM05D003543 ORTHO05D017182 1.5e-10 70.9 91 50.5
Hund23399 Selenicereus undatus HOM05D003543 ORTHO05D004112 3.3e-10 69.7 190 34.7
Peaxi162Scf00520g00221 Petunia axillaris HOM05D003543 ORTHO05D004112 7.4e-10 68.6 161 38.5
Zm00001eb107940 Zea mays HOM05D030178 ORTHO05D004112 1.7e-09 67.4 111 44.1
MD11G1170200 Malus domestica HOM05D003543 ORTHO05D004112 2.8e-09 66.6 96 46.9
Zm00001eb325810 Zea mays HOM05D030178 ORTHO05D004112 8.2e-09 65.1 163 35.6


User provided reference genes

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