Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1473.0 744 100.0
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1323.5 752 90.3
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 756 80.6
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1211.1 755 80.7
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1202.2 760 79.7
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1188.7 726 81.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1187.9 718 81.3
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 760 78.4
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 712 81.3
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 760 77.9
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1183.7 758 78.2
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1182.2 710 81.4
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 719 81.5
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1180.6 761 77.9
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1180.2 714 80.5
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1179.9 754 77.5
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1179.5 718 80.4
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1177.9 761 77.3
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1176.8 703 81.8
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1176.4 703 81.8
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 721 80.3
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1174.8 760 78.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1174.5 740 79.9
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1173.7 728 79.9
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1173.3 757 77.3
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1172.9 727 79.8
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1172.1 758 77.8
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 714 81.1
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 760 77.9
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1169.8 690 83.3
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 759 77.1
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 718 80.1
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1167.5 754 77.1
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1167.1 732 78.4
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1166.8 730 78.9
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1164.8 741 79.4
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1164.1 718 80.4
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1164.1 740 78.9
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1164.1 738 77.8
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1163.3 734 78.3
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1162.9 730 78.8
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1162.9 687 82.2
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1162.9 737 77.7
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1161.7 753 77.2
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1161.4 730 78.9
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1161.0 740 78.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1161.0 754 76.8
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 754 77.1
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1160.6 787 76.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1160.2 717 79.8
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1159.8 737 77.6
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 741 78.5
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 719 80.4
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1157.9 719 78.9
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1157.5 719 80.7
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1157.1 721 79.5
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1157.1 773 76.1
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1156.7 742 78.7
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1156.0 690 82.3
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1155.6 732 78.0
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1155.6 729 78.2
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1154.8 740 78.4
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1154.4 734 78.2
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1152.9 723 78.7
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1152.5 760 76.3
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1152.1 762 75.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1151.7 725 78.2
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1151.3 761 76.0
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1149.8 721 78.9
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1148.7 733 77.6
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1148.7 756 76.3
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1148.7 732 78.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1148.3 719 79.1
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1147.9 741 78.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1142.5 719 78.3
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1142.1 722 78.3
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1140.6 690 80.4
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1139.0 759 75.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1138.6 720 79.0
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1137.5 758 75.7
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1133.6 719 78.6
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1133.2 734 77.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1132.5 756 75.4
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 720 77.6
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 692 79.5
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1130.5 750 75.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1130.5 756 74.7
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1129.8 720 77.6
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1129.8 731 76.9
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1128.6 720 77.5
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1128.6 720 77.5
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1127.9 757 74.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1127.5 757 74.8
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1127.1 718 77.4
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1127.1 758 75.1
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1125.5 740 76.2
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1124.0 720 77.2
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1124.0 720 77.2
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1124.0 757 74.5
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1119.4 719 77.7
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1119.0 737 76.0
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1118.2 771 74.3
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1115.9 825 70.1
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1110.5 765 73.1
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1109.0 720 76.9
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1105.1 658 82.5
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1083.2 731 74.4
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1081.6 658 81.0
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1081.2 658 81.5
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1080.9 658 81.8
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 7.6e-311 1070.1 756 72.0
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 1.8e-307 1058.9 725 73.7
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 3.7e-305 1051.2 703 74.3
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 4.9e-305 1050.8 654 79.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 6.4e-305 1050.4 1063 56.3
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 4.3e-301 1037.7 743 73.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.1e-293 1013.1 615 82.6
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 5.4e-280 967.6 757 67.6
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 3.9e-278 961.4 680 67.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.8e-271 937.2 688 68.0
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.5e-269 932.9 675 68.3
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.5e-269 932.9 675 68.3
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 9.6e-269 930.2 675 68.1
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 6.9e-267 924.1 678 65.9
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 5.8e-266 921.0 676 67.3
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.6e-239 833.2 599 71.8
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.1e-237 827.0 678 60.0
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 8.2e-236 820.8 599 71.3
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.2e-218 763.8 682 55.4
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.2e-217 759.6 696 56.5
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 4.1e-203 712.2 676 55.6
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.6e-193 678.3 676 58.0
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 6.4e-188 661.8 676 51.5
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 5.4e-171 605.5 703 47.1
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.9e-154 548.5 305 87.2
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 5.6e-152 542.3 315 85.1
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.3e-144 516.5 361 70.6
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 9.6e-136 488.4 293 84.3
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 6.7e-129 465.7 301 78.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.3e-111 408.3 309 66.3
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 5.9e-109 399.4 294 67.3
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 3.5e-93 347.1 219 79.0
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.9e-91 341.3 236 72.0
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 6.1e-90 336.3 241 70.5
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.0e-84 318.9 189 82.5
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.4e-81 308.5 298 57.0
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.2e-79 301.2 297 55.9
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.8e-65 255.0 126 96.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.2e-63 248.1 162 75.9
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.4e-62 245.4 172 70.9
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 2.7e-61 241.1 387 42.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.7e-60 238.4 260 53.1
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-58 231.5 114 95.6
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 1.0e-52 212.6 364 36.8
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.5e-45 187.6 117 77.8
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 6.0e-45 186.8 149 66.4
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.4e-41 174.9 162 58.6
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 9.6e-35 152.9 117 65.0
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.5e-32 145.6 122 63.1
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 9.3e-30 136.3 102 62.7
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.6e-29 135.6 113 63.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 2.7e-29 134.8 83 79.5
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 3.9e-28 131.0 131 50.4
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.1e-27 129.4 105 61.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.3e-26 125.9 75 81.3
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 6.9e-25 120.2 61 86.9
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.5e-24 119.0 99 64.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.6e-24 118.2 221 31.2
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.8e-18 98.2 127 50.4
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.0e-15 89.7 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 2.2e-15 88.6 50 78.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.1e-11 76.3 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.1e-09 68.2 38 84.2


User provided reference genes

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