Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 0.0e+00 1752.6 854 100.0
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 0.0e+00 1330.9 839 82.0
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 1.6e-304 1049.3 854 64.2
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 1.1e-297 1026.5 862 63.1
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 6.0e-291 1004.2 852 62.8
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.0e-291 1004.2 893 60.0
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 5.1e-290 1001.1 859 61.4
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 1.9e-289 999.2 851 62.2
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 1.1e-287 993.4 851 61.7
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 1.3e-285 986.5 858 61.4
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 3.8e-285 984.9 857 61.7
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 1.1e-284 983.4 857 61.5
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 4.2e-284 981.5 859 61.8
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 9.3e-284 980.3 851 61.2
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.9e-283 977.2 855 60.8
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.0e-282 976.9 855 60.7
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 5.6e-281 971.1 843 62.2
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 5.6e-281 971.1 855 60.6
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.3e-280 969.9 850 60.8
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 2.8e-280 968.8 850 61.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 2.4e-279 965.7 864 60.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 4.0e-279 964.9 850 60.2
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 1.5e-278 963.0 850 60.9
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 4.5e-278 961.4 850 60.6
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 2.2e-277 959.1 836 62.0
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 3.8e-277 958.4 836 60.9
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 2.1e-275 952.6 901 57.2
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 4.6e-275 951.4 851 60.3
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 6.0e-275 951.0 853 59.8
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 1.3e-272 943.3 850 59.1
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 4.8e-272 941.4 855 58.4
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 6.9e-271 937.6 833 59.9
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 2.2e-269 932.6 856 57.9
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 2.2e-269 932.6 853 59.1
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 2.2e-269 932.6 850 58.6
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 1.1e-268 930.2 860 60.0
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 5.5e-268 927.9 867 59.1
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 9.3e-268 927.2 867 59.1
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 4.6e-267 924.9 847 57.4
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 3.9e-266 921.8 856 57.1
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 8.2e-264 914.1 850 58.4
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 3.1e-263 912.1 856 56.9
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.5e-262 909.8 840 59.6
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 5.9e-262 907.9 863 57.2
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 1.7e-261 906.4 840 59.2
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 6.5e-261 904.4 834 57.9
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 8.4e-261 904.0 860 56.6
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 2.5e-260 902.5 850 57.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 4.2e-260 901.7 840 58.9
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 9.3e-260 900.6 846 57.2
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 9.3e-260 900.6 999 51.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.2e-259 900.2 832 58.8
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 2.1e-259 899.4 836 58.5
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 3.6e-259 898.7 843 57.5
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 1.8e-258 896.3 847 56.3
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 1.9e-257 892.9 792 60.7
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 2.8e-256 889.0 859 56.1
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 2.8e-256 889.0 839 57.3
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 1.4e-255 886.7 835 57.2
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 3.1e-255 885.6 875 55.9
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 3.1e-255 885.6 856 56.7
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 1.2e-254 883.6 796 59.3
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 2.0e-254 882.9 852 57.7
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 6.5e-253 877.9 869 55.7
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 1.2e-251 873.6 862 55.9
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.2e-251 873.6 856 56.3
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 3.6e-251 872.1 855 55.3
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 3.6e-251 872.1 852 57.7
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 4.3e-249 865.1 924 52.8
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 3.7e-248 862.1 867 54.8
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.1e-247 860.5 849 55.6
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 8.5e-245 850.9 828 55.4
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 2.1e-243 846.3 838 54.8
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 8.2e-240 834.3 826 54.5
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 1.1e-239 833.9 929 52.5
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.4e-239 833.6 863 53.8
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 5.3e-239 831.6 824 54.9
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 2.6e-238 829.3 842 56.4
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 3.5e-238 828.9 799 56.9
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.7e-237 826.6 837 55.7
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 6.5e-237 824.7 840 55.6
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 8.5e-237 824.3 836 55.6
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 4.2e-236 822.0 832 55.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 2.1e-235 819.7 837 54.8
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.7e-232 810.1 835 54.6
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.2e-232 809.7 835 54.7
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 7.0e-231 804.7 838 54.9
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 7.0e-231 804.7 838 54.9
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 2.0e-230 803.1 827 53.7
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 5.9e-230 801.6 838 55.0
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 2.3e-226 789.6 845 52.7
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.3e-224 783.9 838 53.9
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 2.5e-220 769.6 767 54.6
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 8.8e-218 761.1 745 55.8
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.9e-191 673.7 770 50.5
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 4.1e-191 672.5 701 53.9
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.6e-180 634.8 909 44.0
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 4.2e-175 619.4 901 43.8
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.5e-152 542.3 395 67.8
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 6.5e-152 542.3 850 41.1
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.3e-151 538.5 824 41.6
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 8.2e-147 525.4 510 58.6
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 2.2e-136 490.7 409 62.3
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.9e-136 490.3 367 67.0
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 2.3e-125 454.1 594 46.3
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.0e-105 387.9 410 52.2
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.0e-105 387.9 371 58.8
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 7.2e-103 379.4 461 49.5
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.9e-96 357.5 494 44.3
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.5e-84 318.5 271 61.3
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.6e-76 291.2 554 37.5
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.6e-76 291.2 554 37.5
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 3.2e-74 284.3 231 62.3
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 3.5e-73 280.8 173 76.3
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.2e-70 272.3 149 85.2
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 3.4e-68 264.2 846 29.6
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.7e-67 261.9 369 44.4
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 5.4e-66 256.9 284 50.4
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.1e-61 242.7 135 85.2
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.4e-58 231.5 143 78.3
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.4e-58 230.3 227 57.3
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.1e-55 222.6 135 75.6
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.2e-51 208.4 117 78.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.3e-39 167.9 231 42.4
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.4e-37 162.5 240 38.8
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 4.8e-30 137.5 184 45.1
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 3.0e-24 118.2 208 34.1
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 2.0e-20 105.5 161 36.6
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 2.6e-20 105.1 128 45.3
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 3.7e-14 84.7 58 63.8
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.6e-12 78.6 103 46.6
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-11 76.3 128 36.7
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-11 76.3 55 63.6
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-11 75.9 55 63.6
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 9.4e-10 70.1 33 87.9
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 9.4e-10 70.1 62 61.3
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.3e-08 65.5 118 35.6


User provided reference genes

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