Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.9e-113 412.9 280 100.0
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.9e-23 114.0 227 41.0
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.2e-22 111.3 199 37.2
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 7.8e-22 108.6 210 42.4
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.3e-21 107.1 201 38.8
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.0e-21 106.7 194 39.7
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 6.6e-21 105.5 212 38.7
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.2e-17 94.7 216 38.0
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 1.2e-17 94.7 208 35.1
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 3.4e-17 93.2 209 34.9
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 1.1e-15 88.2 212 35.4
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 5.4e-15 85.9 171 34.5
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 7.1e-15 85.5 238 34.0
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 9.3e-15 85.1 218 34.9
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.2e-14 84.7 225 33.3
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 6.0e-14 82.4 209 36.4
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 7.8e-14 82.0 223 33.6
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.3e-13 81.3 209 32.1
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.7e-13 80.9 202 34.2
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 3.0e-13 80.1 206 33.5
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 3.9e-13 79.7 211 34.1
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 6.6e-13 79.0 210 33.3
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 8.7e-13 78.6 213 32.9
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.1e-12 78.2 203 32.5
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 1.1e-12 78.2 208 32.2
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.5e-12 77.8 206 34.0
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.5e-12 77.0 212 31.6
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 3.3e-12 76.6 207 31.4
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 3.3e-12 76.6 207 31.4
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 4.3e-12 76.3 209 34.4
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 5.6e-12 75.9 219 30.1
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 7.3e-12 75.5 214 34.1
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.3e-12 75.5 204 32.4
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 7.3e-12 75.5 210 32.4
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 1.3e-11 74.7 215 32.6
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.3e-11 74.7 212 33.0
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.3e-11 74.7 174 36.2
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.1e-11 73.9 210 32.4
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 2.1e-11 73.9 208 33.2
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 2.8e-11 73.6 220 33.2
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.8e-11 73.6 202 35.6
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 3.6e-11 73.2 215 32.6
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 4.8e-11 72.8 200 33.0
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 4.8e-11 72.8 212 32.1
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 4.8e-11 72.8 213 33.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 6.2e-11 72.4 205 32.7
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 6.2e-11 72.4 221 32.6
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 8.1e-11 72.0 218 32.6
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 8.1e-11 72.0 214 30.4
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.4e-10 71.2 172 32.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 1.4e-10 71.2 212 32.5
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.8e-10 70.9 224 33.5
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.8e-10 70.9 212 32.1
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 2.4e-10 70.5 217 31.3
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 3.1e-10 70.1 212 31.6
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 3.1e-10 70.1 171 33.3
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 5.3e-10 69.3 211 33.2
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 5.3e-10 69.3 203 30.0
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 6.9e-10 68.9 207 33.8
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 6.9e-10 68.9 108 40.7
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 6.9e-10 68.9 166 34.9
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 9.0e-10 68.6 209 31.6
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.2e-09 68.2 166 34.3
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 2.0e-09 67.4 112 40.2
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 2.6e-09 67.0 204 33.3
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 3.4e-09 66.6 190 33.2
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 3.4e-09 66.6 184 31.5
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 3.4e-09 66.6 217 30.9
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.4e-09 66.2 88 42.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 5.8e-09 65.9 208 31.7
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 5.8e-09 65.9 234 30.3
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 5.8e-09 65.9 86 45.3
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 7.6e-09 65.5 194 31.4
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 9.9e-09 65.1 229 29.3
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.7e-08 64.3 113 40.7
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.7e-08 64.3 168 33.3
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.2e-08 63.9 177 33.9
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.9e-08 63.5 214 31.3
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 2.9e-08 63.5 205 31.7
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 2.9e-08 63.5 86 45.3
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 3.8e-08 63.2 213 30.5
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 6.4e-08 62.4 203 29.1
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 6.4e-08 62.4 70 44.3
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 8.4e-08 62.0 221 32.6
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 8.4e-08 62.0 212 31.1
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 1.4e-07 61.2 202 29.7
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.9e-07 60.8 193 29.0
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.9e-07 60.8 175 30.9
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.9e-07 60.8 175 34.9
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.4e-07 60.5 80 46.2
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 2.4e-07 60.5 224 29.9
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 3.2e-07 60.1 81 40.7
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.2e-07 59.7 50 56.0
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 4.2e-07 59.7 216 28.2
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 4.2e-07 59.7 224 27.7
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 4.2e-07 59.7 206 30.6
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 5.4e-07 59.3 36 72.2
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 5.4e-07 59.3 169 30.8
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 5.4e-07 59.3 217 30.9
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 7.1e-07 58.9 213 29.1
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 7.1e-07 58.9 227 28.2
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 7.1e-07 58.9 218 28.4
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 7.1e-07 58.9 212 28.3
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 9.3e-07 58.5 82 40.2
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 9.3e-07 58.5 84 42.9
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 9.3e-07 58.5 206 29.1
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.2e-06 58.2 82 45.1
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 1.2e-06 58.2 207 29.5
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-06 57.8 195 29.7
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.6e-06 57.8 82 42.7
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.6e-06 57.8 216 30.6
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 2.1e-06 57.4 214 29.0
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.1e-06 57.4 214 29.0
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 2.7e-06 57.0 209 29.7
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 3.5e-06 56.6 175 33.1
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 3.5e-06 56.6 179 27.9
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.5e-06 56.6 181 30.4
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 4.6e-06 56.2 205 29.3
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 4.6e-06 56.2 211 28.0
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 4.6e-06 56.2 76 46.1
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.0e-06 55.8 88 38.6
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 6.0e-06 55.8 53 52.8
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 6.0e-06 55.8 34 70.6
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 6.0e-06 55.8 104 37.5


User provided reference genes

Program Settings