Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 0.0e+00 1309.7 668 100.0
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.5e-233 813.1 649 63.8
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 7.9e-230 800.8 671 61.0
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 5.6e-228 794.7 666 61.4
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 3.1e-226 788.9 644 60.9
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.2e-225 786.9 670 60.3
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 7.6e-225 784.3 648 61.7
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.0e-224 783.9 648 61.6
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.9e-224 782.3 648 61.6
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 6.5e-224 781.2 652 59.0
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 1.1e-223 780.4 666 58.6
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.9e-223 779.6 643 60.5
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 3.2e-223 778.9 648 60.5
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 5.5e-223 778.1 662 59.1
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.2e-222 776.9 703 58.9
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 2.1e-222 776.2 646 60.8
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 6.0e-222 774.6 666 59.8
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 5.1e-221 771.5 668 59.1
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 8.7e-221 770.8 644 61.2
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 1.5e-220 770.0 671 58.4
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.9e-220 769.6 671 57.8
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 7.4e-220 767.7 666 59.2
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.6e-219 766.5 672 57.9
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 8.2e-219 764.2 671 57.1
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.4e-218 763.5 644 58.9
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 3.1e-218 762.3 696 56.2
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.2e-217 760.4 667 58.9
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 1.5e-217 760.0 667 59.4
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 2.6e-217 759.2 666 58.0
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.0e-216 757.3 669 58.0
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.0e-216 757.3 670 58.1
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.7e-216 756.5 665 58.0
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 2.9e-216 755.7 665 57.6
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 5.0e-216 755.0 665 56.7
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 8.5e-216 754.2 670 57.9
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 8.5e-216 754.2 666 57.1
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 5.5e-215 751.5 663 58.5
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 5.5e-215 751.5 660 58.9
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 1.0e-213 747.3 665 58.5
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.0e-213 747.3 661 57.0
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 1.8e-213 746.5 645 58.9
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 5.1e-213 745.0 672 56.8
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.9e-212 743.0 667 57.6
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 2.5e-212 742.7 651 57.0
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 3.3e-212 742.3 669 56.8
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.3e-212 742.3 669 56.7
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 2.8e-211 739.2 664 56.2
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 4.8e-211 738.4 644 58.2
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 1.8e-210 736.5 672 57.4
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 4.1e-210 735.3 665 56.4
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 5.3e-210 734.9 668 57.2
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.2e-209 733.8 653 58.5
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.5e-209 733.4 670 56.3
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 2.6e-209 732.6 668 57.0
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 5.9e-209 731.5 691 55.4
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.4e-207 726.9 675 55.9
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 7.2e-207 724.5 666 57.7
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 2.7e-206 722.6 695 54.5
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.4e-205 720.3 670 56.6
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 7.4e-204 714.5 669 55.3
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.8e-203 712.6 670 54.2
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 3.7e-203 712.2 669 55.3
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 8.2e-203 711.1 734 52.5
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 4.1e-202 708.8 667 54.9
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 7.7e-201 704.5 672 54.6
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 7.7e-201 704.5 669 54.4
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 2.9e-200 702.6 672 55.1
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 1.4e-199 700.3 580 60.5
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 4.2e-199 698.7 673 54.5
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 9.4e-199 697.6 665 54.4
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.2e-198 697.2 672 55.2
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.7e-198 696.0 636 57.1
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 3.0e-197 692.6 668 54.8
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 4.4e-196 688.7 643 55.2
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.2e-195 686.4 663 54.9
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 2.8e-195 686.0 724 49.9
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 8.2e-195 684.5 636 55.2
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.4e-194 683.7 583 58.8
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 5.3e-194 681.8 647 55.3
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 2.6e-193 679.5 695 53.7
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 4.5e-193 678.7 696 51.9
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 7.7e-193 677.9 723 51.0
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 3.8e-192 675.6 662 52.9
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 5.2e-189 665.2 742 49.9
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 5.2e-189 665.2 646 54.3
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.9e-184 649.4 662 51.5
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.7e-182 642.1 592 55.6
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 8.0e-182 641.3 693 50.1
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.0e-181 641.0 556 60.3
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 1.0e-181 641.0 575 57.6
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 7.5e-180 634.8 572 56.8
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 1.7e-179 633.6 639 52.4
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 7.0e-178 628.2 631 53.7
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 5.4e-170 602.1 514 60.7
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.7e-169 599.7 662 50.2
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 4.5e-169 599.0 662 48.9
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 9.5e-167 591.3 679 46.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 6.4e-163 578.6 618 51.3
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.9e-162 577.0 648 47.4
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.2e-158 564.3 674 47.6
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.7e-153 546.6 507 56.2
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 1.9e-138 497.3 678 42.8
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 1.2e-124 451.4 578 45.2
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 2.6e-116 423.7 351 59.3
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 7.9e-97 359.0 309 58.9
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 6.5e-91 339.3 307 55.4
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 8.2e-78 295.8 239 63.2
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 8.8e-72 275.8 666 30.9
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 1.3e-70 271.9 366 42.9
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 1.1e-66 258.8 355 44.5
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 8.8e-64 249.2 338 43.5
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 9.8e-55 219.2 308 38.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 8.1e-41 172.9 316 34.2
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.1e-37 162.5 175 48.0
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 1.6e-36 158.7 643 26.7
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 4.0e-32 144.1 112 61.6
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.1e-26 125.9 173 43.4
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 4.3e-26 124.0 122 50.8
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 1.1e-21 109.4 115 53.0
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.3e-17 95.9 96 51.0
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 8.1e-17 93.2 95 53.7
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.1e-12 78.6 70 55.7
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 8.7e-11 73.2 64 50.0
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 3.3e-10 71.2 62 53.2
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 3.3e-10 71.2 62 53.2
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 4.3e-10 70.9 66 51.5
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 5.6e-10 70.5 53 58.5
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-09 69.3 66 50.0
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 8.1e-09 66.6 66 50.0
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.1e-08 66.2 91 37.4
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 4.0e-08 64.3 105 41.9
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 4.0e-08 64.3 105 41.0
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 3.4e-07 61.2 42 69.0
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 9.9e-07 59.7 73 38.4
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 4.9e-06 57.4 38 63.2


User provided reference genes

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