Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.0e-66 255.8 138 100.0
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.1e-60 235.7 138 91.3
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 3.2e-53 211.8 138 82.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.2e-53 211.8 138 82.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.2e-52 209.9 138 81.2
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.6e-52 208.4 138 80.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 4.7e-52 208.0 138 79.7
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 6.1e-52 207.6 139 81.3
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 8.0e-52 207.2 138 79.7
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 8.0e-52 207.2 139 81.3
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.4e-51 206.5 140 80.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.3e-51 205.7 139 80.6
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.0e-51 205.3 138 79.0
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.0e-51 205.3 139 80.6
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.0e-51 205.3 139 80.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 5.2e-51 204.5 138 78.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 5.2e-51 204.5 138 78.3
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 6.7e-51 204.1 139 80.6
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.8e-51 203.8 138 78.3
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 8.8e-51 203.8 139 80.6
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 8.8e-51 203.8 139 79.9
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.1e-50 203.4 140 78.6
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.1e-50 203.4 138 78.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.1e-50 203.4 138 78.3
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.0e-50 202.6 138 77.5
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.0e-50 202.6 152 73.7
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 2.6e-50 202.2 138 78.3
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.3e-50 201.8 141 78.7
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 4.4e-50 201.4 140 78.6
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.4e-50 201.4 139 79.1
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 5.7e-50 201.1 138 81.2
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 7.4e-50 200.7 141 78.7
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.4e-50 200.7 139 78.4
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.3e-49 199.9 138 76.8
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.3e-49 199.9 139 77.7
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.8e-49 198.7 140 77.1
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.8e-49 198.7 141 77.3
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-49 198.7 139 77.7
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-49 198.7 139 77.7
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.7e-49 198.4 143 75.5
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.7e-49 198.4 140 78.6
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 3.7e-49 198.4 138 79.0
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 4.8e-49 198.0 139 77.0
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 6.3e-49 197.6 141 77.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 8.2e-49 197.2 140 77.9
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.8e-48 196.1 138 75.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.1e-48 195.3 140 75.7
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.1e-48 195.3 139 77.7
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 4.1e-48 194.9 140 75.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 4.1e-48 194.9 142 75.4
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 7.0e-48 194.1 138 77.5
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 9.1e-48 193.7 138 75.4
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.2e-47 193.4 138 73.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.2e-47 193.4 141 76.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.2e-47 193.4 137 76.6
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.0e-47 192.6 140 76.4
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 2.0e-47 192.6 139 76.3
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.5e-47 191.8 138 73.9
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 4.5e-47 191.4 139 75.5
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 4.5e-47 191.4 138 73.9
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.5e-47 191.4 140 75.0
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 7.7e-47 190.7 140 75.0
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.0e-46 190.3 137 75.2
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.0e-46 190.3 137 75.2
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.3e-46 189.9 147 72.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.7e-46 189.5 140 75.0
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.7e-46 189.5 149 72.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 2.2e-46 189.1 140 74.3
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.9e-46 188.7 138 73.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.9e-46 188.7 138 73.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.8e-46 188.3 138 73.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 3.8e-46 188.3 138 73.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.0e-46 188.0 138 71.7
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 5.0e-46 188.0 138 73.2
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.0e-46 188.0 139 74.1
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 8.5e-46 187.2 137 74.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.1e-45 186.8 138 73.2
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-45 186.0 151 70.9
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-45 186.0 151 70.9
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.9e-45 186.0 164 67.1
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.2e-45 185.3 141 72.3
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.2e-45 184.9 143 71.3
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 4.2e-45 184.9 137 72.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 7.2e-45 184.1 148 70.9
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 9.4e-45 183.7 143 70.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.2e-44 183.3 140 73.6
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-44 183.3 138 73.2
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.6e-44 183.0 137 71.5
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 3.6e-44 181.8 139 71.2
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 4.7e-44 181.4 160 65.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 4.7e-44 181.4 137 70.8
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.0e-43 180.3 176 60.8
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.8e-43 179.5 140 69.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 5.2e-43 177.9 152 68.4
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 8.8e-43 177.2 140 71.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-42 176.8 155 67.1
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-42 176.8 155 67.1
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.5e-42 176.4 168 62.5
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 9.8e-42 173.7 136 72.8
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.8e-42 173.7 144 66.7
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.3e-41 173.3 141 69.5
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.3e-41 173.3 172 59.9
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.8e-41 171.4 144 65.3
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-40 170.2 146 64.4
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 3.1e-40 168.7 134 70.1
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.4e-40 167.9 138 63.0
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 9.1e-40 167.2 118 76.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 9.1e-40 167.2 148 63.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.6e-39 166.4 112 78.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.7e-39 165.6 134 70.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 6.5e-38 161.0 138 62.3
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.5e-37 159.1 138 60.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.1e-36 156.0 113 75.2
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 3.6e-36 155.2 113 75.2
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.2e-35 151.4 168 50.6
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-34 150.2 126 71.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 9.8e-34 147.1 114 70.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.2e-33 146.0 139 58.3
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.2e-33 146.0 115 68.7
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.6e-31 139.8 119 64.7
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.0e-31 139.4 136 56.6
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 5.9e-31 137.9 112 68.8
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.0e-30 137.1 164 51.2
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 5.5e-29 131.3 134 59.0
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 5.5e-29 131.3 134 59.7
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 6.1e-28 127.9 155 52.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 5.2e-27 124.8 111 64.0
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.2e-26 123.6 131 55.7
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.5e-26 123.2 97 69.1
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 4.4e-26 121.7 108 63.9
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 4.4e-26 121.7 135 52.6
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.4e-26 121.7 79 84.8
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.7e-26 121.3 79 83.5
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.3e-25 117.5 79 81.0
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.2e-24 115.5 79 79.7
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.2e-24 115.5 78 82.1
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.2e-24 114.0 75 84.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-23 112.5 138 51.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.6e-23 111.7 69 84.1
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.9e-22 109.0 69 84.1
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 4.3e-21 105.1 114 55.3
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.3e-19 99.4 130 49.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 2.2e-17 92.8 85 61.2
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.2e-16 89.0 69 71.0
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 3.2e-16 89.0 85 58.8
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-15 85.1 69 62.3
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.0e-15 84.7 57 78.9
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 7.8e-15 84.3 100 53.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.8e-15 84.3 58 74.1
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 9.5e-13 77.4 130 38.5
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.8e-11 73.2 85 52.9
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.7e-09 66.6 77 49.4
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 4.9e-09 65.1 58 60.3
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 6.0e-07 58.2 72 48.6
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 6.0e-07 58.2 72 48.6


User provided reference genes

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