Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 5.6e-112 407.5 194 100.0
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.1e-70 270.4 185 72.4
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.8e-18 96.3 121 39.7
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.2e-16 90.9 124 37.9
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.4e-16 89.0 124 35.5
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 8.4e-15 84.7 185 31.4
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-14 84.3 95 41.1
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.9e-14 83.6 126 33.3
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.4e-14 83.2 160 31.2
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 7.1e-14 81.6 169 28.4
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 7.1e-14 81.6 79 45.6
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.2e-13 80.9 81 45.7
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.2e-13 80.9 85 41.2
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.6e-13 80.5 76 46.1
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.1e-13 80.1 88 39.8
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.5e-13 79.3 132 33.3
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.6e-13 79.0 76 44.7
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 4.6e-13 79.0 73 43.8
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.0e-12 77.8 157 29.3
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.0e-12 77.8 157 29.3
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.0e-12 77.8 157 29.3
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.0e-12 77.8 100 35.0
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.3e-12 77.4 157 29.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.3e-12 77.4 157 29.3
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.3e-12 77.4 71 46.5
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.3e-12 77.4 86 40.7
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.3e-12 77.4 120 32.5
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.3e-12 76.6 112 31.2
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.3e-12 76.6 72 48.6
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 2.3e-12 76.6 74 41.9
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 2.3e-12 76.6 94 37.2
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.0e-12 76.3 100 39.0
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.0e-12 76.3 76 43.4
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 3.9e-12 75.9 138 32.6
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 5.1e-12 75.5 74 41.9
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 6.6e-12 75.1 85 43.5
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.6e-12 75.1 133 34.6
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 8.7e-12 74.7 70 44.3
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 8.7e-12 74.7 94 37.2
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 8.7e-12 74.7 95 38.9
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 8.7e-12 74.7 95 40.0
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.1e-11 74.3 74 39.2
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.5e-11 73.9 81 39.5
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 1.5e-11 73.9 79 41.8
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.9e-11 73.6 81 39.5
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.9e-11 73.6 81 39.5
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.9e-11 73.6 84 38.1
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.9e-11 73.6 180 30.0
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.5e-11 73.2 92 39.1
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 3.3e-11 72.8 70 42.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 3.3e-11 72.8 123 29.3
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 3.3e-11 72.8 97 34.0
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 3.3e-11 72.8 69 43.5
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 4.3e-11 72.4 74 41.9
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 4.3e-11 72.4 119 36.1
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.3e-11 72.4 119 36.1
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.3e-11 72.4 84 36.9
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 4.3e-11 72.4 75 40.0
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 5.6e-11 72.0 113 38.1
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 5.6e-11 72.0 97 40.2
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 7.3e-11 71.6 106 34.9
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 7.3e-11 71.6 75 40.0
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 7.3e-11 71.6 107 36.4
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 9.6e-11 71.2 70 42.9
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 9.6e-11 71.2 81 38.3
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 9.6e-11 71.2 139 30.2
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 9.6e-11 71.2 72 44.4
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 9.6e-11 71.2 80 37.5
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.3e-10 70.9 66 45.5
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.3e-10 70.9 92 37.0
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 1.3e-10 70.9 71 42.3
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 1.3e-10 70.9 135 34.8
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.6e-10 70.5 107 34.6
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.6e-10 70.5 75 41.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.8e-10 69.7 119 36.1
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.8e-10 69.7 71 42.3
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.6e-10 69.3 75 38.7
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 3.6e-10 69.3 91 40.7
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.8e-10 68.9 93 38.7
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 4.8e-10 68.9 92 37.0
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 4.8e-10 68.9 93 38.7
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 6.2e-10 68.6 133 29.3
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 6.2e-10 68.6 147 33.3
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 6.2e-10 68.6 99 34.3
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 8.1e-10 68.2 118 34.7
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 8.1e-10 68.2 111 34.2
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.1e-09 67.8 68 41.2
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.1e-09 67.8 150 28.0
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-09 67.4 77 37.7
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-09 67.4 77 37.7
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.4e-09 67.4 77 37.7
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.4e-09 67.4 77 37.7
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.8e-09 67.0 166 26.5
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.4e-09 66.6 70 37.1
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.4e-09 66.6 67 40.3
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 2.4e-09 66.6 77 36.4
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 3.1e-09 66.2 100 31.0
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 4.0e-09 65.9 121 32.2
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 5.3e-09 65.5 73 38.4
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 9.0e-09 64.7 69 42.0
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.5e-08 63.9 129 31.0
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.5e-08 63.9 60 41.7
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.0e-08 63.5 114 30.7
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 2.6e-08 63.2 111 34.2
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.6e-08 63.2 121 28.9
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.4e-08 62.8 110 37.3
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.4e-08 62.8 73 39.7
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 4.5e-08 62.4 73 39.7
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 5.8e-08 62.0 66 42.4
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 5.8e-08 62.0 80 37.5
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 5.8e-08 62.0 96 32.3
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 5.8e-08 62.0 85 36.5
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 5.8e-08 62.0 74 44.6
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 9.9e-08 61.2 114 28.1
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.3e-07 60.8 124 29.8
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-07 60.8 59 45.8
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.7e-07 60.5 161 28.0
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 2.2e-07 60.1 87 36.8
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 2.9e-07 59.7 77 40.3
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 2.9e-07 59.7 68 36.8
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.9e-07 59.7 70 37.1
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.8e-07 59.3 68 38.2
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.4e-07 58.5 68 36.8
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.1e-06 57.8 59 45.8
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.4e-06 56.6 69 36.2
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.4e-06 56.6 71 38.0
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 2.4e-06 56.6 59 45.8
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.4e-06 56.6 67 35.8
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.2e-06 56.2 71 36.6
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 3.2e-06 56.2 61 41.0
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 4.2e-06 55.8 59 39.0
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 5.4e-06 55.5 53 43.4
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 5.4e-06 55.5 136 27.9
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 5.4e-06 55.5 68 33.8
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 5.4e-06 55.5 63 36.5
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 5.4e-06 55.5 67 37.3


User provided reference genes

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