Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.1e-101 373.2 183 100.0
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 6.1e-100 367.5 183 97.8
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 6.5e-86 320.9 188 82.4
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 1.9e-85 319.3 188 81.4
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.5e-85 318.9 188 81.9
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.5e-85 318.9 188 81.9
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 3.3e-85 318.5 187 81.8
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 9.5e-85 317.0 188 81.4
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 1.6e-84 316.2 189 78.8
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 2.8e-84 315.5 188 79.8
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 3.6e-84 315.1 188 80.3
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 3.6e-84 315.1 189 79.9
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 1.0e-83 313.5 189 79.4
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.0e-83 313.5 189 79.9
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.4e-83 313.2 188 80.3
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 3.0e-83 312.0 188 77.7
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 4.0e-83 311.6 188 79.3
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 4.0e-83 311.6 188 79.3
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 5.2e-83 311.2 189 79.4
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 6.8e-83 310.8 189 78.3
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 6.8e-83 310.8 187 79.1
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 6.8e-83 310.8 189 78.8
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 8.9e-83 310.5 189 78.8
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 8.9e-83 310.5 189 78.8
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 8.9e-83 310.5 187 79.1
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 8.9e-83 310.5 188 78.2
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 1.2e-82 310.1 189 77.8
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 1.2e-82 310.1 187 78.1
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.5e-82 309.7 190 76.3
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 1.5e-82 309.7 188 78.2
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 1.5e-82 309.7 191 77.5
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.5e-82 309.7 193 77.2
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 2.0e-82 309.3 189 78.8
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 2.0e-82 309.3 189 77.2
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 2.6e-82 308.9 189 77.8
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.6e-82 308.9 188 78.7
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 3.4e-82 308.5 192 77.1
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 3.4e-82 308.5 191 77.5
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 3.4e-82 308.5 190 78.4
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 3.4e-82 308.5 188 79.3
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 4.4e-82 308.1 191 77.5
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 5.7e-82 307.8 190 75.8
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 7.5e-82 307.4 189 77.2
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 1.3e-81 306.6 189 76.7
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 1.3e-81 306.6 188 77.7
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 1.7e-81 306.2 191 77.0
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 2.8e-81 305.4 191 74.3
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 2.8e-81 305.4 189 77.2
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 2.8e-81 305.4 191 77.0
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 3.7e-81 305.1 189 76.7
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.9e-81 304.7 189 75.1
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 4.9e-81 304.7 188 76.6
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 4.9e-81 304.7 188 76.6
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.9e-81 304.7 189 77.2
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 6.3e-81 304.3 191 73.8
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 6.3e-81 304.3 189 75.7
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 1.1e-80 303.5 189 77.2
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.1e-80 303.5 189 76.7
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.8e-80 302.8 192 76.0
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 2.4e-80 302.4 189 74.6
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 2.4e-80 302.4 192 74.5
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.4e-80 302.4 183 79.2
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 3.1e-80 302.0 193 76.2
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 3.1e-80 302.0 193 75.6
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 4.1e-80 301.6 189 77.8
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 5.4e-80 301.2 191 74.9
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 1.2e-79 300.1 192 75.0
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 2.7e-79 298.9 190 74.2
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 3.5e-79 298.5 190 73.7
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 3.5e-79 298.5 189 75.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 4.5e-79 298.1 185 76.2
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 4.5e-79 298.1 192 74.0
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 5.9e-79 297.7 191 74.3
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 5.9e-79 297.7 189 75.1
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 7.8e-79 297.4 191 73.8
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 1.0e-78 297.0 189 73.0
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.3e-78 296.6 189 74.1
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 1.3e-78 296.6 191 74.3
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 1.3e-78 296.6 193 75.1
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 2.3e-78 295.8 191 73.8
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 2.3e-78 295.8 191 73.8
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 2.9e-78 295.4 191 73.3
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 3.8e-78 295.0 191 73.8
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 3.8e-78 295.0 192 71.4
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 5.0e-78 294.7 191 73.8
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 6.6e-78 294.3 189 74.6
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 8.6e-78 293.9 191 73.3
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 8.6e-78 293.9 190 74.7
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.1e-77 293.5 191 72.8
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 1.1e-77 293.5 191 72.8
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.1e-77 293.5 191 72.8
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 1.5e-77 293.1 194 72.2
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.9e-77 292.7 191 72.8
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 3.3e-77 292.0 191 73.3
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.3e-77 292.0 189 73.0
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 4.3e-77 291.6 191 72.3
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 7.3e-77 290.8 191 72.3
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 7.3e-77 290.8 189 73.5
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 9.5e-77 290.4 189 74.1
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 1.2e-76 290.0 191 72.3
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.6e-76 289.7 186 74.2
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.8e-76 288.9 189 72.0
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.8e-75 286.2 191 70.2
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 5.2e-75 284.6 184 72.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 5.8e-74 281.2 188 70.2
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 6.4e-73 277.7 178 74.2
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.0e-66 256.1 186 64.0
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 2.6e-66 255.8 191 66.5
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 6.4e-65 251.1 189 65.1
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.1e-64 250.4 181 70.7
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.2e-63 246.9 190 62.6
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 3.3e-61 238.8 156 71.2
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 3.3e-61 238.8 158 71.5
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 9.5e-61 237.3 190 60.5
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.2e-60 236.9 145 80.7
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 9.2e-56 220.7 147 72.8
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.3e-53 211.1 183 53.6
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.6e-52 208.8 183 53.0
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 6.2e-52 208.0 149 67.1
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 3.1e-51 205.7 185 55.1
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 7.6e-50 201.1 184 53.3
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.3e-49 200.3 187 50.3
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 7.8e-47 191.0 181 51.4
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 4.7e-44 181.8 176 55.7
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 9.3e-40 167.5 182 49.5
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 3.0e-38 162.5 187 47.6
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 2.2e-33 146.4 90 75.6
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 2.1e-31 139.8 91 72.5
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 3.2e-24 115.9 79 69.6
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 5.5e-24 115.2 182 34.6
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 3.5e-23 112.5 177 33.9
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 3.7e-20 102.4 50 90.0
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 1.2e-10 70.9 146 32.2
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 1.1e-08 64.3 31 90.3
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.6e-07 60.5 28 89.3


User provided reference genes

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