Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0961 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 2.2e-128 462.2 224 100.0
Manes.18G005900 Manihot esculenta HOM05D004614 ORTHO05D005339 3.1e-21 106.3 202 39.1
Thecc.08G058000 Theobroma cacao HOM05D004614 ORTHO05D005339 2.6e-20 103.2 203 37.4
Gohir.A05G179800 Gossypium hirsutum HOM05D004614 ORTHO05D005339 5.9e-20 102.1 203 36.0
Gohir.D05G182900 Gossypium hirsutum HOM05D004614 ORTHO05D005339 5.9e-20 102.1 203 36.0
Gorai.009G188200 Gossypium raimondii HOM05D004614 ORTHO05D005339 5.9e-20 102.1 203 36.0
CDE02G2145 Ceratophyllum demersum HOM05D004614 ORTHO05D005339 7.6e-20 101.7 207 37.2
Duzib093G0152 Durio zibethinus HOM05D004614 ORTHO05D005339 7.6e-20 101.7 190 37.9
Duzib041G0192 Durio zibethinus HOM05D004614 ORTHO05D005339 1.0e-19 101.3 198 37.4
Hma1.2p1_0507F.1_g168400 Hydrangea macrophylla HOM05D004614 ORTHO05D005339 1.0e-19 101.3 210 36.2
COL.COLO4_04001 Corchorus olitorius HOM05D004614 ORTHO05D005339 1.3e-19 100.9 197 37.1
Atru.chr13.150 Acer truncatum HOM05D004614 ORTHO05D005339 1.7e-19 100.5 197 36.5
MD15G1002600 Malus domestica HOM05D004614 ORTHO05D005339 1.7e-19 100.5 215 36.3
Nitab4.5_0000588g0160 Nicotiana tabacum HOM05D004614 ORTHO05D005339 2.9e-19 99.8 192 38.5
TWI36G0356 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 2.9e-19 99.8 206 35.9
Eucgr.F03550 Eucalyptus grandis HOM05D004614 ORTHO05D005339 3.8e-19 99.4 203 36.0
Potri.005G249700 Populus trichocarpa HOM05D004614 ORTHO05D005339 3.8e-19 99.4 194 37.6
THA.LOC104813167 Tarenaya hassleriana HOM05D004614 ORTHO05D005339 5.0e-19 99.0 205 36.6
Duzib116G0199 Durio zibethinus HOM05D004614 ORTHO05D005339 6.5e-19 98.6 195 37.9
Hund01763 Selenicereus undatus HOM05D004614 ORTHO05D005339 6.5e-19 98.6 135 45.9
Thhalv10004272m.g Eutrema salsugineum HOM05D004614 ORTHO05D005339 8.5e-19 98.2 194 38.7
MD08G1002900 Malus domestica HOM05D004614 ORTHO05D005339 8.5e-19 98.2 215 34.9
Manes.05G134900 Manihot esculenta HOM05D004614 ORTHO05D005339 8.5e-19 98.2 222 34.2
TWI56G0787 Tripterygium wilfordii HOM05D004614 ORTHO05D005339 8.5e-19 98.2 200 35.5
TAR625G0334 Trochodendron aralioides HOM05D004614 ORTHO05D005339 8.5e-19 98.2 197 37.6
Ah.00g000370 Amaranthus hybridus HOM05D004614 ORTHO05D005339 1.1e-18 97.8 192 34.9
CsaV3_6G031620 Cucumis sativus L. HOM05D004614 ORTHO05D005339 1.1e-18 97.8 198 36.9
Sabra05G0193200 Salix brachista HOM05D004614 ORTHO05D005339 1.1e-18 97.8 193 36.3
AUR62036884 Chenopodium quinoa HOM05D004614 ORTHO05D005339 1.4e-18 97.4 127 44.1
Ciclev10001231m.g Citrus clementina HOM05D004614 ORTHO05D005339 1.4e-18 97.4 202 37.1
TAR381G0464 Trochodendron aralioides HOM05D004614 ORTHO05D005339 1.4e-18 97.4 192 37.5
CARHR292370 Cardamine hirsuta HOM05D004614 ORTHO05D005339 1.9e-18 97.1 184 40.2
Rhsim07G0254700 Rhododendron simsii HOM05D004614 ORTHO05D005339 1.9e-18 97.1 193 36.3
ATR0661G410 Amborella trichopoda HOM05D004614 ORTHO05D005339 3.2e-18 96.3 197 38.1
A08p07800 Brassica napus HOM05D004614 ORTHO05D005339 3.2e-18 96.3 194 39.2
BraA08t32800Z Brassica rapa HOM05D004614 ORTHO05D005339 3.2e-18 96.3 194 39.2
FAN15G3067 Fragaria x ananassa HOM05D004614 ORTHO05D005339 3.2e-18 96.3 198 36.9
Peaxi162Scf00893g00434 Petunia axillaris HOM05D004614 ORTHO05D005339 3.2e-18 96.3 142 42.3
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.2e-18 96.3 198 35.9
Carub.0001s3422 Capsella rubella HOM05D004614 ORTHO05D005339 4.2e-18 95.9 179 40.2
Rhsim06G0008000 Rhododendron simsii HOM05D004614 ORTHO05D005339 4.2e-18 95.9 193 36.8
GSVIVG01008677001 Vitis vinifera HOM05D004614 ORTHO05D005339 5.5e-18 95.5 143 43.4
Aqoxy6G01739 Aquilegia oxysepala HOM05D004614 ORTHO05D005339 7.2e-18 95.1 126 43.7
BcaC07g37479 Brassica carinata HOM05D004614 ORTHO05D005339 7.2e-18 95.1 152 40.8
C08p09450 Brassica napus HOM05D004614 ORTHO05D005339 7.2e-18 95.1 152 40.8
BolC8t47801H Brassica oleracea HOM05D004614 ORTHO05D005339 7.2e-18 95.1 152 40.8
CSS0048285 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 7.2e-18 95.1 143 44.1
Cfa014064 Carpinus fangiana HOM05D004614 ORTHO05D005339 7.2e-18 95.1 195 36.4
CiPaw.07G139400 Carya illinoinensis HOM05D004614 ORTHO05D005339 7.2e-18 95.1 128 46.1
AUR62043351 Chenopodium quinoa HOM05D004614 ORTHO05D005339 7.2e-18 95.1 127 42.5
Medtr3g115210 Medicago truncatula HOM05D004614 ORTHO05D005339 7.2e-18 95.1 194 36.1
Potri.002G011300 Populus trichocarpa HOM05D004614 ORTHO05D005339 7.2e-18 95.1 195 35.9
Prupe.1G354900 Prunus persica HOM05D004614 ORTHO05D005339 7.2e-18 95.1 206 36.4
PGSC0003DMG400009975 Solanum tuberosum HOM05D004614 ORTHO05D005339 7.2e-18 95.1 198 35.9
Actinidia37970 Actinidia chinensis HOM05D004614 ORTHO05D005339 9.3e-18 94.7 196 36.2
CANSAT25G1550 Cannabis sativa HOM05D004614 ORTHO05D005339 9.3e-18 94.7 195 36.4
Lj4A805T24 Lonicera japonica HOM05D004614 ORTHO05D005339 9.3e-18 94.7 201 34.8
Sopen04g035910 Solanum pennellii HOM05D004614 ORTHO05D005339 9.3e-18 94.7 198 34.8
AT1G42430 Arabidopsis thaliana HOM05D004614 ORTHO05D005339 1.2e-17 94.4 177 40.1
AL1G51310 Arabidopsis lyrata HOM05D004614 ORTHO05D005339 1.6e-17 94.0 143 42.7
BcaB04g17805 Brassica carinata HOM05D004614 ORTHO05D005339 1.6e-17 94.0 153 41.2
MELO3C026543.2 Cucumis melo HOM05D004614 ORTHO05D005339 1.6e-17 94.0 198 36.4
ECA232G3530 Erigeron canadensis HOM05D004614 ORTHO05D005339 1.6e-17 94.0 127 43.3
Psat5g011520 Pisum sativum HOM05D004614 ORTHO05D005339 1.6e-17 94.0 189 34.9
RcHm_v2.0_Chr6g0304201 Rosa chinensis HOM05D004614 ORTHO05D005339 1.6e-17 94.0 206 35.9
Sp1g32010 Schrenkiella parvula HOM05D004614 ORTHO05D005339 1.6e-17 94.0 194 37.6
TPR.G38127 Trifolium pratense HOM05D004614 ORTHO05D005339 1.6e-17 94.0 191 35.6
vmacro04401 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.1e-17 93.6 193 36.8
CAN.G311.111 Capsicum annuum HOM05D004614 ORTHO05D005339 2.7e-17 93.2 128 43.0
Cc10_g00730 Coffea canephora HOM05D004614 ORTHO05D005339 2.7e-17 93.2 142 41.5
FAN27G1062 Fragaria x ananassa HOM05D004614 ORTHO05D005339 2.7e-17 93.2 198 36.4
QL02p013984 Quercus lobata HOM05D004614 ORTHO05D005339 2.7e-17 93.2 205 35.6
DCAR_016768 Daucus carota HOM05D004614 ORTHO05D005339 3.6e-17 92.8 127 44.1
Nn6g31744 Nelumbo nucifera HOM05D004614 ORTHO05D005339 3.6e-17 92.8 195 38.5
Solyc04g082290.4 Solanum lycopersicum HOM05D004614 ORTHO05D005339 3.6e-17 92.8 198 34.8
Sopen12g031480 Solanum pennellii HOM05D004614 ORTHO05D005339 3.6e-17 92.8 211 33.6
VMungo1309G2703 Vigna mungo HOM05D004614 ORTHO05D005339 3.6e-17 92.8 196 36.2
Migut.C00954 Erythranthe guttata HOM05D004614 ORTHO05D005339 6.1e-17 92.0 135 41.5
FvH4_2g37530 Fragaria vesca HOM05D004614 ORTHO05D005339 6.1e-17 92.0 198 36.4
HanXRQChr05g0146811 Helianthus annuus HOM05D004614 ORTHO05D005339 6.1e-17 92.0 193 33.7
Haze_22759 Corylus avellana HOM05D004614 ORTHO05D005339 7.9e-17 91.7 205 33.7
Glyma.04G018400 Glycine max HOM05D004614 ORTHO05D005339 7.9e-17 91.7 128 43.0
Gohir.A01G106500 Gossypium hirsutum HOM05D004614 ORTHO05D005339 7.9e-17 91.7 172 40.1
Gorai.002G118400 Gossypium raimondii HOM05D004614 ORTHO05D005339 1.0e-16 91.3 175 38.9
PGSC0003DMG400029318 Solanum tuberosum HOM05D004614 ORTHO05D005339 1.0e-16 91.3 211 33.2
Dinv31932 Davidia involucrata HOM05D004614 ORTHO05D005339 1.3e-16 90.9 217 34.1
Lsat_1_v5_gn_2_6461 Lactuca sativa HOM05D004614 ORTHO05D005339 1.3e-16 90.9 128 41.4
Glyma.06G018700 Glycine max HOM05D004614 ORTHO05D005339 2.3e-16 90.1 195 34.9
Gohir.D01G093000 Gossypium hirsutum HOM05D004614 ORTHO05D005339 2.3e-16 90.1 175 38.3
Phvul.009G010200 Phaseolus vulgaris HOM05D004614 ORTHO05D005339 2.3e-16 90.1 196 36.2
Sed0024410 Sechium edule HOM05D004614 ORTHO05D005339 3.0e-16 89.7 194 34.5
arahy.Tifrunner.gnm1.ann1.7DZ9XI Arachis hypogaea HOM05D004614 ORTHO05D005339 3.9e-16 89.4 127 40.9
arahy.Tifrunner.gnm1.ann1.MYP9FH Arachis hypogaea HOM05D004614 ORTHO05D005339 3.9e-16 89.4 127 40.9
Lsat_1_v5_gn_9_45021 Lactuca sativa HOM05D004614 ORTHO05D005339 3.9e-16 89.4 126 41.3
Lalb_Chr11g0061661 Lupinus albus HOM05D004614 ORTHO05D005339 3.9e-16 89.4 127 40.9
unitig_748.g7709 Utricularia gibba HOM05D004614 ORTHO05D005339 5.1e-16 89.0 135 40.7
Lj1g0005022 Lotus japonicus HOM05D004614 ORTHO05D005339 6.7e-16 88.6 203 35.0
Actinidia29786 Actinidia chinensis HOM05D004614 ORTHO05D005339 8.7e-16 88.2 195 35.4
CiPaw.08G072400 Carya illinoinensis HOM05D004614 ORTHO05D005339 8.7e-16 88.2 128 43.8
unitig_82.g27116 Utricularia gibba HOM05D004614 ORTHO05D005339 1.5e-15 87.4 217 31.3
HanXRQChr14g0428261 Helianthus annuus HOM05D004614 ORTHO05D005339 1.9e-15 87.0 190 34.7
HanXRQChr15g0492731 Helianthus annuus HOM05D004614 ORTHO05D005339 1.9e-15 87.0 126 39.7
Ca_15438_v3 Cicer arietinum L. HOM05D004614 ORTHO05D005339 3.3e-15 86.3 128 41.4
Cpa.g.sc26.206 Carica papaya HOM05D004614 ORTHO05D005339 4.3e-15 85.9 147 39.5
Zm00001eb002680 Zea mays HOM05D004614 ORTHO05D005339 7.4e-15 85.1 128 41.4
HPP92_020707 Vanilla planifolia HOM05D004614 ORTHO05D005339 9.7e-15 84.7 197 34.0
ClCG08G009540 Citrullus lanatus HOM05D004614 ORTHO05D005339 2.8e-14 83.2 138 39.9
FAN20G3039 Fragaria x ananassa HOM05D004614 ORTHO05D005339 3.7e-14 82.8 228 30.3
SGA_v2.0_scaffold275G46591 Striga asiatica HOM05D004614 ORTHO05D005339 3.7e-14 82.8 205 34.1
Os03g0133300 Oryza sativa ssp. japonica HOM05D004614 ORTHO05D005339 8.2e-14 81.6 128 40.6
Nn5g30931 Nelumbo nucifera HOM05D004614 ORTHO05D005339 1.1e-13 81.3 113 42.5
TAR376G0430 Trochodendron aralioides HOM05D004614 ORTHO05D005339 2.4e-13 80.1 122 40.2
EL10Ac1g01977 Beta vulgaris HOM05D004614 ORTHO05D005339 4.1e-13 79.3 155 34.2
SEGI_03937 Sequoiadendron giganteum HOM05D004614 ORTHO05D005339 4.1e-13 79.3 134 36.6
Nitab4.5_0000699g0050 Nicotiana tabacum HOM05D004614 ORTHO05D005339 5.3e-13 79.0 161 34.2
Peaxi162Scf00064g01132 Petunia axillaris HOM05D004614 ORTHO05D005339 1.2e-12 77.8 129 41.1
Mapoly0189s0007 Marchantia polymorpha HOM05D004614 ORTHO05D005339 3.4e-12 76.3 131 37.4
Nitab4.5_0010763g0030 Nicotiana tabacum HOM05D004614 ORTHO05D005339 4.5e-12 75.9 134 39.6
PSO541G0908 Papaver somniferum HOM05D004614 ORTHO05D005339 7.7e-12 75.1 128 37.5
PSO675G0524 Papaver somniferum HOM05D004614 ORTHO05D005339 1.0e-11 74.7 128 37.5
Dinv25909 Davidia involucrata HOM05D004614 ORTHO05D005339 1.3e-11 74.3 35 85.7
Pp3c7_400 Physcomitrium patens HOM05D004614 ORTHO05D005339 2.2e-11 73.6 134 38.8
Sc15g0004500 Simmondsia chinensis HOM05D004614 ORTHO05D005339 2.2e-11 73.6 35 82.9
Zm00001eb402600 Zea mays HOM05D004614 ORTHO05D005339 2.9e-11 73.2 123 39.0
PGR031G0851 Punica granatum HOM05D004614 ORTHO05D005339 2.5e-10 70.1 35 80.0
Lj4A12T77 Lonicera japonica HOM05D004614 ORTHO05D005339 5.5e-10 68.9 33 78.8
CSS0047318 Camellia sinensis var. sinensis HOM05D004614 ORTHO05D005339 4.6e-09 65.9 32 81.2
Nitab4.5_0006949g0040 Nicotiana tabacum HOM05D004614 ORTHO05D005339 4.6e-09 65.9 81 44.4
SMO169G0316 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 3.0e-08 63.2 35 77.1
Pp3c11_25930 Physcomitrium patens HOM05D004614 ORTHO05D005339 6.7e-08 62.0 157 32.5
MD07G1011800 Malus domestica HOM05D004614 ORTHO05D005339 3.3e-07 59.7 28 82.1
SMO202G0022 Selaginella moellendorffii HOM05D004614 ORTHO05D005339 4.4e-07 59.3 101 40.6


User provided reference genes

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