Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 0.0e+00 1099.0 511 100.0
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.3e-208 729.9 462 69.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 5.9e-201 704.5 462 67.3
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.5e-196 689.9 437 67.7
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 3.3e-196 688.7 459 65.6
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.2e-195 686.0 448 66.5
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 6.3e-195 684.5 515 60.6
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.8e-194 682.9 515 60.4
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.8e-194 682.9 477 63.9
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 2.4e-194 682.6 455 65.5
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.1e-194 682.2 427 69.6
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 9.1e-194 680.6 444 67.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 9.1e-194 680.6 444 67.1
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 9.1e-194 680.6 477 63.9
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 4.5e-193 678.3 482 64.3
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 5.9e-193 677.9 439 67.0
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.9e-193 677.9 464 64.4
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 7.7e-193 677.6 477 63.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.0e-192 677.2 450 66.7
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 1.3e-192 676.8 425 68.0
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.7e-192 676.4 483 63.8
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.7e-192 676.4 441 67.8
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.7e-192 676.4 433 67.2
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 2.2e-192 676.0 481 64.2
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.2e-192 676.0 481 63.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 2.9e-192 675.6 469 64.6
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 5.0e-192 674.9 457 64.3
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 8.5e-192 674.1 487 62.6
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.1e-191 673.7 458 64.0
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.1e-191 673.7 441 66.9
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.1e-191 673.7 447 65.8
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.9e-191 672.9 474 63.5
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.9e-191 672.9 467 64.5
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.9e-191 672.9 459 64.3
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.9e-191 672.9 444 65.3
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.5e-191 672.5 462 65.4
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 3.2e-191 672.2 481 62.6
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.2e-191 671.8 462 65.4
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 4.2e-191 671.8 482 62.9
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 8.0e-190 667.5 472 63.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.0e-189 667.2 467 62.7
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.8e-189 666.4 460 64.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.3e-189 666.0 468 64.5
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 3.0e-189 665.6 436 66.5
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 3.0e-189 665.6 444 64.9
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 3.0e-189 665.6 479 63.0
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 4.0e-189 665.2 473 63.0
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 5.2e-189 664.8 428 67.5
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 5.2e-189 664.8 468 63.0
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 5.2e-189 664.8 469 62.7
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.5e-188 663.3 445 65.2
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.5e-188 663.3 437 65.4
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.0e-188 662.9 445 64.9
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.0e-188 662.9 449 63.9
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.0e-188 662.9 427 67.2
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 2.6e-188 662.5 448 64.5
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 4.4e-188 661.8 462 63.4
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 7.5e-188 661.0 472 62.5
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 9.7e-188 660.6 510 58.6
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.7e-187 659.8 469 63.8
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 4.8e-187 658.3 454 63.4
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.4e-186 656.0 445 65.2
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 2.4e-186 656.0 434 65.7
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 7.0e-186 654.4 445 63.8
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 9.1e-186 654.1 435 64.8
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 9.1e-186 654.1 424 67.2
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.2e-185 653.7 480 60.6
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.6e-185 653.3 435 64.8
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 7.7e-185 651.0 436 64.7
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 7.7e-185 651.0 436 64.7
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 2.9e-184 649.0 458 62.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.5e-184 647.9 494 59.5
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.1e-183 647.1 489 61.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.1e-183 647.1 572 54.2
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.1e-183 647.1 461 61.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.9e-183 646.4 433 64.9
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 3.2e-183 645.6 456 62.5
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 4.2e-183 645.2 436 62.8
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 5.5e-183 644.8 423 66.7
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 5.5e-183 644.8 461 61.6
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 5.5e-183 644.8 430 65.6
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.1e-182 642.9 425 65.9
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 8.0e-182 641.0 443 63.0
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 2.0e-180 636.3 428 64.5
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.3e-179 633.6 444 62.6
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 5.4e-178 628.2 425 63.3
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 2.0e-177 626.3 423 63.4
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 1.7e-176 623.2 436 61.7
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.5e-175 620.2 458 62.0
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 6.1e-174 614.8 453 62.0
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.0e-173 612.1 496 57.3
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.5e-172 610.1 499 57.1
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.0e-172 609.8 432 61.1
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.7e-168 596.7 445 61.3
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 4.3e-167 592.0 427 62.5
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.4e-165 587.0 465 57.0
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 7.5e-164 581.3 456 59.4
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 7.0e-162 574.7 378 65.1
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 2.0e-161 573.2 373 67.0
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 3.9e-160 568.9 427 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 3.1e-157 559.3 417 58.0
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-156 557.4 380 63.9
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-156 557.4 380 63.9
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.4e-156 555.4 364 66.8
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.7e-155 553.5 359 67.7
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 7.3e-151 538.1 445 54.8
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.4e-149 533.9 434 55.8
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 6.8e-149 531.6 427 55.5
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 8.9e-149 531.2 380 62.4
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 7.8e-145 518.1 486 51.2
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.1e-141 506.1 430 55.6
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 8.9e-141 504.6 325 64.9
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 4.9e-139 498.8 396 55.3
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 8.4e-139 498.0 518 47.1
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 9.0e-133 478.0 408 54.2
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-131 472.2 440 57.0
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 3.2e-130 469.5 418 52.2
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 2.1e-129 466.8 320 63.4
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 2.0e-124 450.3 431 51.3
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.5e-116 424.1 269 65.8
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.3e-112 411.0 253 71.9
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 8.7e-96 355.1 455 39.8
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.5e-87 327.8 218 62.8
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.2e-68 265.0 183 61.7
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.9e-67 260.4 430 37.0
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 5.5e-66 256.1 162 69.8
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.7e-55 219.5 110 80.9
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.8e-55 218.8 148 62.8
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.4e-53 214.2 128 75.0
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 3.3e-50 203.8 147 64.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.0e-43 180.6 148 52.0
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 5.4e-37 159.8 135 53.3
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.0e-36 156.4 118 55.9
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.9e-32 142.5 183 39.9
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 4.9e-30 136.7 109 51.4
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.6e-25 121.7 176 41.5
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.8e-24 116.3 62 82.3
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 2.2e-14 84.7 60 55.0
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.3e-10 70.9 138 34.8
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.7e-06 58.5 41 53.7


User provided reference genes

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