Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.9e-201 705.7 360 100.0
CDE11G0435 Ceratophyllum demersum HOM05D007001 ORTHO05D004300 3.4e-30 136.7 85 82.4
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.3e-24 118.2 248 32.7
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.4e-23 114.0 224 34.4
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.1e-23 113.6 224 34.4
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 5.3e-23 112.8 268 31.7
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.6e-22 111.3 245 35.5
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 2.0e-22 110.9 264 33.3
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.0e-22 110.9 238 34.5
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 2.6e-22 110.5 248 31.9
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.5e-22 110.2 250 34.8
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 1.0e-21 108.6 164 39.0
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 2.9e-21 107.1 248 33.1
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 3.8e-21 106.7 166 38.0
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.0e-21 106.3 242 33.1
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 5.0e-21 106.3 246 32.9
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 5.0e-21 106.3 170 40.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.5e-21 105.9 241 33.2
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 6.5e-21 105.9 208 37.5
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 8.5e-21 105.5 169 37.9
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 8.5e-21 105.5 216 32.4
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 2.5e-20 104.0 255 31.0
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 5.5e-20 102.8 190 34.2
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 7.2e-20 102.4 267 30.3
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 7.2e-20 102.4 235 32.8
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 9.4e-20 102.1 193 35.2
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 9.4e-20 102.1 251 31.9
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 9.4e-20 102.1 164 40.2
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 8.0e-19 99.0 246 32.5
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 8.0e-19 99.0 164 36.0
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.4e-18 98.2 254 31.1
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.3e-18 97.4 168 38.7
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 2.3e-18 97.4 190 37.4
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.2e-18 96.3 247 31.2
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 4.4e-17 93.2 165 40.6
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 4.4e-17 93.2 217 31.3
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 4.4e-17 93.2 240 32.5
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 7.5e-17 92.4 185 30.8
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 9.7e-17 92.0 172 37.2
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.3e-16 91.7 327 28.1
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.7e-16 90.1 251 31.5
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.8e-16 89.7 168 35.7
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.1e-15 88.6 177 33.3
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.4e-15 88.2 229 30.1
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.4e-15 88.2 164 34.8
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.4e-15 88.2 168 34.5
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 1.8e-15 87.8 156 37.2
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 4.1e-15 86.7 219 30.6
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.3e-15 86.3 281 31.0
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.0e-14 84.3 328 25.9
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 2.7e-14 84.0 181 34.3
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 4.5e-14 83.2 258 29.8
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.3e-13 81.6 228 29.4
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.7e-13 81.3 214 32.2
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.2e-13 80.9 191 30.4
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 2.2e-13 80.9 185 33.0
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 2.2e-13 80.9 163 31.3
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.9e-13 80.5 240 28.8
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 6.5e-13 79.3 214 30.8
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 8.5e-13 79.0 182 32.4
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.1e-12 78.6 168 34.5
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.9e-12 77.8 189 31.7
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 1.9e-12 77.8 214 30.8
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.9e-12 77.8 267 29.2
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.6e-11 74.7 240 27.9
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.6e-11 74.7 166 31.9
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.7e-11 73.9 249 28.9
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 3.6e-11 73.6 226 30.5
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 6.1e-11 72.8 177 33.9
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 6.1e-11 72.8 168 32.1
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 6.1e-11 72.8 257 27.2
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.0e-10 72.0 163 34.4
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.8e-10 71.2 212 27.8
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.8e-10 71.2 175 31.4
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 4.0e-10 70.1 250 28.4
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 4.0e-10 70.1 222 30.2
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 5.2e-10 69.7 161 29.8
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 6.8e-10 69.3 105 41.9
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.2e-09 68.6 101 39.6
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.5e-09 68.2 150 33.3
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.5e-09 68.2 103 41.7
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 2.6e-09 67.4 209 28.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 7.5e-09 65.9 241 27.4
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 7.5e-09 65.9 288 26.0
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.3e-08 65.1 185 27.6
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.3e-08 65.1 60 45.0
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.7e-08 64.7 46 63.0
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.7e-08 64.7 47 57.4
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.2e-08 64.3 60 43.3
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 2.8e-08 63.9 197 27.9
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 2.8e-08 63.9 47 57.4
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 2.8e-08 63.9 60 45.0
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.7e-08 63.5 50 54.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.7e-08 63.5 50 54.0
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 4.8e-08 63.2 174 29.9
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.8e-08 63.2 211 28.4
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 4.8e-08 63.2 55 50.9
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 6.3e-08 62.8 173 30.1
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 6.3e-08 62.8 47 55.3
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 6.3e-08 62.8 100 40.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 8.3e-08 62.4 243 27.6
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.3e-08 62.4 44 61.4
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-07 62.0 174 29.3
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.1e-07 62.0 174 29.3
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.1e-07 62.0 174 29.3
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.1e-07 62.0 46 58.7
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.1e-07 62.0 46 58.7
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.4e-07 61.6 106 41.5
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.4e-07 61.6 43 60.5
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.8e-07 61.2 258 24.8
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.8e-07 61.2 53 54.7
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.4e-07 60.8 60 41.7
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 2.4e-07 60.8 46 54.3
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 2.4e-07 60.8 194 30.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-07 60.8 47 53.2
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 3.1e-07 60.5 180 26.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 3.1e-07 60.5 114 36.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 3.1e-07 60.5 47 53.2
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.1e-07 60.5 47 55.3
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 3.1e-07 60.5 53 50.9
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 3.1e-07 60.5 112 38.4
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 4.1e-07 60.1 93 40.9
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 4.1e-07 60.1 259 25.9
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 4.1e-07 60.1 53 54.7
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 5.4e-07 59.7 53 47.2
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.0e-07 59.3 223 28.3
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 7.0e-07 59.3 166 30.1
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 7.0e-07 59.3 118 33.9
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 9.1e-07 58.9 51 49.0
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 9.1e-07 58.9 51 49.0
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 9.1e-07 58.9 51 49.0
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 9.1e-07 58.9 47 53.2
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 9.1e-07 58.9 213 24.9
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 9.1e-07 58.9 51 51.0
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.2e-06 58.5 74 43.2
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.2e-06 58.5 116 33.6
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.6e-06 58.2 213 23.5
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.6e-06 58.2 179 26.3
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.6e-06 58.2 180 29.4
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.0e-06 57.8 97 39.2
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.0e-06 57.8 258 24.0
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-06 57.8 103 42.7
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.0e-06 57.8 103 42.7
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.0e-06 57.8 103 42.7
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 2.0e-06 57.8 273 26.0
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 2.0e-06 57.8 85 38.8
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.0e-06 57.8 51 49.0
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.0e-06 57.8 47 57.4
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.0e-06 57.8 114 38.6
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.7e-06 57.4 250 26.8
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.7e-06 57.4 66 43.9
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.7e-06 57.4 53 50.9
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 2.7e-06 57.4 74 40.5
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.5e-06 57.0 247 26.3
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.5e-06 57.0 247 26.3
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 3.5e-06 57.0 93 38.7
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.5e-06 56.6 301 23.3
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 4.5e-06 56.6 74 40.5
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 4.5e-06 56.6 256 25.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 4.5e-06 56.6 252 27.0
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 5.9e-06 56.2 247 25.9
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 5.9e-06 56.2 247 25.9
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.9e-06 56.2 233 28.8
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 5.9e-06 56.2 113 37.2
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.9e-06 56.2 67 43.3
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.9e-06 56.2 67 43.3
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 5.9e-06 56.2 113 35.4
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 5.9e-06 56.2 253 23.7
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.9e-06 56.2 113 37.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 7.7e-06 55.8 56 44.6
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 7.7e-06 55.8 103 39.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 7.7e-06 55.8 244 25.8
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 7.7e-06 55.8 51 52.9
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 7.7e-06 55.8 47 57.4
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 7.7e-06 55.8 79 36.7


User provided reference genes

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