Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.9e-64 247.3 118 100.0
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.2e-58 228.8 118 92.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 4.7e-45 184.5 113 74.3
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 4.7e-45 184.5 119 75.6
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.2e-44 181.0 120 74.2
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.2e-44 181.0 120 74.2
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.0e-43 179.1 110 74.5
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.5e-43 177.2 112 71.4
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 9.8e-43 176.8 112 71.4
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.3e-42 176.4 117 71.8
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.3e-42 176.4 118 73.7
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.7e-42 176.0 117 70.9
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.9e-42 175.3 118 70.3
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 2.9e-42 175.3 119 71.4
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 8.3e-42 173.7 118 72.0
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 3.2e-41 171.8 114 71.1
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 3.2e-41 171.8 106 72.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 5.4e-41 171.0 108 72.2
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 5.4e-41 171.0 115 70.4
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 9.2e-41 170.2 112 70.5
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.2e-40 169.9 97 81.4
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.2e-40 169.9 108 75.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.1e-40 169.1 105 73.3
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 3.5e-40 168.3 108 72.2
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.5e-40 168.3 120 69.2
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 4.6e-40 167.9 118 68.6
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 6.0e-40 167.5 114 68.4
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.3e-39 166.4 107 72.9
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.3e-39 166.4 99 74.7
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 1.7e-39 166.0 105 73.3
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 3.9e-39 164.9 105 73.3
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 5.1e-39 164.5 114 68.4
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.6e-39 164.1 110 70.9
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 8.6e-39 163.7 118 65.3
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 8.6e-39 163.7 115 66.1
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.1e-38 163.3 118 66.1
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-38 163.3 105 73.3
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.5e-38 162.9 109 68.8
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.9e-38 162.5 105 72.4
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.9e-38 162.5 114 65.8
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.9e-38 162.5 119 65.5
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 3.3e-38 161.8 99 73.7
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 5.6e-38 161.0 105 71.4
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 5.6e-38 161.0 109 68.8
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 7.3e-38 160.6 105 73.3
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 9.5e-38 160.2 115 64.3
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.2e-37 159.8 105 70.5
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.2e-37 159.8 120 64.2
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.6e-37 159.5 114 66.7
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.6e-37 159.5 98 74.5
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.6e-37 159.5 109 69.7
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.6e-37 159.5 112 67.9
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.6e-37 159.5 103 69.9
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.1e-37 159.1 98 74.5
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.8e-37 158.7 115 66.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.8e-37 158.7 116 64.7
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.8e-37 158.7 97 74.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.8e-37 158.7 109 67.9
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.6e-37 158.3 118 63.6
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 4.7e-37 157.9 114 65.8
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 4.7e-37 157.9 107 70.1
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 6.2e-37 157.5 104 70.2
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 8.1e-37 157.1 106 67.9
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 8.1e-37 157.1 97 75.3
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 8.1e-37 157.1 105 69.5
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 8.1e-37 157.1 105 69.5
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.1e-36 156.8 107 68.2
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.1e-36 156.8 98 73.5
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.1e-36 156.8 93 76.3
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.4e-36 156.4 118 62.7
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.8e-36 156.0 108 65.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.8e-36 156.0 110 65.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-36 155.6 96 74.0
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.1e-36 155.2 110 64.5
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.1e-36 155.2 118 62.7
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.1e-36 155.2 118 62.7
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.1e-36 155.2 93 76.3
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 4.0e-36 154.8 107 69.2
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 4.0e-36 154.8 105 70.5
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 4.0e-36 154.8 110 68.2
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.2e-36 154.5 118 61.9
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.2e-36 154.5 118 61.9
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 5.2e-36 154.5 117 63.2
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 6.8e-36 154.1 114 63.2
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 6.8e-36 154.1 98 72.4
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.8e-36 154.1 118 62.7
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 8.9e-36 153.7 113 63.7
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 8.9e-36 153.7 104 70.2
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.2e-35 153.3 115 66.1
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 113 63.7
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.5e-35 152.9 113 63.7
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.5e-35 152.9 97 71.1
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 102 70.6
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.5e-35 152.9 108 65.7
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.0e-35 152.5 114 60.5
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.0e-35 152.5 96 74.0
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.0e-35 152.5 97 71.1
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 2.0e-35 152.5 118 62.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.6e-35 152.1 118 61.9
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.6e-35 152.1 118 61.9
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 2.6e-35 152.1 112 61.6
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 2.6e-35 152.1 114 60.5
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 2.6e-35 152.1 114 60.5
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 2.6e-35 152.1 114 60.5
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.6e-35 152.1 114 60.5
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 2.6e-35 152.1 104 69.2
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 2.6e-35 152.1 104 69.2
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 4.4e-35 151.4 118 61.9
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 5.8e-35 151.0 118 62.7
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.8e-35 151.0 102 69.6
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.8e-35 151.0 104 66.3
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 5.8e-35 151.0 102 70.6
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 7.6e-35 150.6 105 68.6
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 9.9e-35 150.2 102 66.7
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 9.9e-35 150.2 105 65.7
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 9.9e-35 150.2 102 69.6
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 9.9e-35 150.2 102 69.6
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-34 149.8 117 59.8
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-34 149.8 117 59.8
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.3e-34 149.8 118 61.0
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 2.2e-34 149.1 102 65.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.2e-34 149.1 104 67.3
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.9e-34 148.7 102 66.7
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 3.8e-34 148.3 91 74.7
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 4.9e-34 147.9 102 65.7
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.9e-34 147.9 102 69.6
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 4.9e-34 147.9 87 74.7
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 8.4e-34 147.1 104 64.4
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 8.4e-34 147.1 104 64.4
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 8.4e-34 147.1 86 74.4
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.9e-33 146.0 111 61.3
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.1e-33 144.8 107 64.5
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 5.4e-33 144.4 98 66.3
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 7.1e-33 144.1 98 67.3
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 7.1e-33 144.1 101 67.3
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 4.6e-32 141.4 87 72.4
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.0e-31 140.2 78 76.9
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.0e-31 140.2 97 67.0
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.3e-31 139.0 118 55.9
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 6.2e-29 131.0 105 60.0
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 8.1e-29 130.6 121 54.5
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 7.6e-27 124.0 82 67.1
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 7.1e-25 117.5 95 57.9
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.3e-23 113.2 62 77.4
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.3e-23 113.2 103 53.4
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 8.1e-21 104.0 86 60.5
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 4.0e-20 101.7 68 67.6
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.4e-19 98.6 71 63.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 9.9e-19 97.1 86 51.2
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.7e-18 96.3 76 63.2
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 2.1e-16 89.4 73 50.7
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 3.5e-16 88.6 51 72.5
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-14 83.2 70 60.0
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 3.1e-12 75.5 81 48.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 3.5e-08 62.0 54 50.0
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 1.3e-07 60.1 49 57.1
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.0e-07 58.9 117 35.9
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.5e-06 55.8 54 55.6


User provided reference genes

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