Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 4.5e-172 607.8 304 100.0
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 1.8e-101 373.2 287 65.5
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 2.8e-97 359.4 256 64.8
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 8.0e-97 357.8 301 60.5
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.0e-95 353.2 293 60.8
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 2.0e-95 353.2 254 65.7
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 3.4e-95 352.4 255 65.9
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 7.5e-95 351.3 255 65.1
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 1.3e-94 350.5 247 68.8
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.7e-94 350.1 262 65.6
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 3.7e-94 349.0 256 66.0
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 8.3e-94 347.8 260 65.0
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 8.3e-94 347.8 254 65.4
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.4e-93 347.1 267 63.3
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 4.1e-93 345.5 269 62.5
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 5.4e-93 345.1 262 64.1
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 5.4e-93 345.1 250 67.2
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 1.6e-92 343.6 252 65.9
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 2.7e-92 342.8 253 65.2
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 3.5e-92 342.4 255 63.1
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 6.0e-92 341.7 262 62.6
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 1.3e-91 340.5 252 64.3
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 2.3e-91 339.7 267 61.0
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 2.5e-90 336.3 256 63.3
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 3.3e-90 335.9 256 64.5
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 5.6e-90 335.1 269 61.3
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 5.6e-90 335.1 259 63.7
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 7.3e-90 334.7 269 60.6
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 9.5e-90 334.3 256 63.3
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 9.5e-90 334.3 256 63.3
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.6e-89 333.6 255 62.0
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 2.1e-89 333.2 298 57.0
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.1e-89 333.2 261 61.7
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 2.1e-89 333.2 251 64.9
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 2.8e-89 332.8 251 65.3
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 3.6e-89 332.4 256 64.5
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 4.7e-89 332.0 276 59.8
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 8.0e-89 331.3 255 62.4
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 4.0e-88 328.9 294 57.1
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 4.0e-88 328.9 260 62.3
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 6.8e-88 328.2 263 61.2
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 8.9e-88 327.8 239 64.4
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.5e-87 327.0 286 59.8
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 2.0e-87 326.6 256 63.3
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 2.6e-87 326.2 258 62.4
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 4.4e-87 325.5 247 64.4
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 4.4e-87 325.5 276 59.1
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.7e-86 323.6 239 64.9
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 2.2e-86 323.2 302 54.6
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 3.7e-86 322.4 253 61.3
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 3.7e-86 322.4 253 61.7
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 3.7e-86 322.4 273 59.7
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 3.7e-86 322.4 249 63.5
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 4.9e-86 322.0 271 58.3
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 4.9e-86 322.0 305 53.8
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 6.4e-86 321.6 253 61.3
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.4e-85 319.7 267 59.6
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 3.2e-85 319.3 254 62.6
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 4.1e-85 318.9 253 61.3
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 5.4e-85 318.5 300 55.7
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 2.7e-84 316.2 261 60.2
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 7.8e-84 314.7 251 63.3
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.0e-83 314.3 238 65.5
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.7e-83 313.5 259 61.4
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 3.0e-83 312.8 267 58.1
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 3.9e-83 312.4 280 55.4
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 5.1e-83 312.0 265 58.5
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 5.1e-83 312.0 266 58.3
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.5e-82 310.5 237 62.9
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 2.5e-82 309.7 264 58.0
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 3.3e-82 309.3 296 56.1
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.3e-82 309.3 243 62.6
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 3.6e-81 305.8 271 55.4
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 8.1e-81 304.7 261 57.5
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 8.1e-81 304.7 261 57.5
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 3.1e-80 302.8 261 57.9
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 3.1e-80 302.8 264 56.8
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 6.8e-80 301.6 249 58.2
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 7.6e-79 298.1 283 53.7
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 7.6e-79 298.1 283 53.7
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 7.6e-79 298.1 256 60.5
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 3.7e-78 295.8 305 50.5
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 2.1e-76 290.0 232 60.8
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 5.1e-75 285.4 269 54.6
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 1.8e-72 276.9 255 55.3
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.6e-68 263.8 253 53.4
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 2.3e-67 260.0 286 49.0
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 6.2e-65 251.9 199 63.8
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 1.1e-64 251.1 263 51.0
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 6.9e-64 248.4 291 47.1
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 5.8e-63 245.4 291 46.7
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.1e-58 231.1 186 58.6
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 4.0e-56 222.6 209 55.5
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 5.3e-56 222.2 182 59.3
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 9.0e-56 221.5 184 57.6
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.0e-55 220.3 171 62.0
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 2.6e-55 219.9 292 43.8
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 6.0e-52 208.8 258 43.8
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 7.6e-47 191.8 209 49.8
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.3e-46 191.0 190 54.2
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.5e-45 186.8 150 58.0
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 1.7e-38 164.1 164 53.0
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 4.2e-37 159.5 126 60.3
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.3e-35 153.7 145 51.0
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.1e-34 151.4 183 51.4
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 8.5e-22 108.6 248 33.5
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 4.4e-18 96.3 282 30.5
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 8.8e-11 72.0 53 62.3
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 1.5e-10 71.2 223 24.7
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 3.3e-10 70.1 320 24.4
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 4.4e-10 69.7 262 25.6
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 7.5e-10 68.9 241 26.1
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 9.7e-10 68.6 243 25.9
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 9.7e-10 68.6 53 58.5
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 1.3e-09 68.2 241 27.4
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 1.7e-09 67.8 241 26.6
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 2.2e-09 67.4 269 27.9
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 2.2e-09 67.4 242 27.3
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 2.8e-09 67.0 265 24.9
Gohir.D09G107900 Gossypium hirsutum HOM05D006655 ORTHO05D007986 2.8e-09 67.0 241 26.1
Gorai.006G125600 Gossypium raimondii HOM05D006655 ORTHO05D007986 2.8e-09 67.0 241 26.1
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 4.8e-09 66.2 297 24.9
MSTRG.18452 Avicennia marina HOM05D006655 ORTHO05D007986 8.2e-09 65.5 243 24.7
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 8.2e-09 65.5 243 25.9
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 1.4e-08 64.7 241 25.3
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 1.8e-08 64.3 243 24.7
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 1.8e-08 64.3 241 26.1
THA.LOC104816930 Tarenaya hassleriana HOM05D006655 ORTHO05D007986 1.8e-08 64.3 256 25.0
DCAR_029978 Daucus carota HOM05D006655 ORTHO05D007986 2.4e-08 63.9 230 26.5
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 3.1e-08 63.5 252 24.2
COL.COLO4_04115 Corchorus olitorius HOM05D006655 ORTHO05D007986 3.1e-08 63.5 243 25.5
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 3.1e-08 63.5 91 36.3
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 4.1e-08 63.2 241 26.6
Thecc.09G243400 Theobroma cacao HOM05D006655 ORTHO05D007986 4.1e-08 63.2 241 25.7
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 5.3e-08 62.8 263 25.9
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 5.3e-08 62.8 241 24.9
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 5.3e-08 62.8 249 25.7
CsaV3_1G043150 Cucumis sativus L. HOM05D006655 ORTHO05D007986 1.6e-07 61.2 251 24.3
Solyc01g008920.4 Solanum lycopersicum HOM05D006655 ORTHO05D007986 2.7e-07 60.5 226 23.9
Sopen01g004410 Solanum pennellii HOM05D006655 ORTHO05D007986 2.7e-07 60.5 226 23.9
Nn2g14958 Nelumbo nucifera HOM05D006655 ORTHO05D007986 3.5e-07 60.1 241 24.9
unitig_90.g27460 Utricularia gibba HOM05D006655 ORTHO05D007986 1.3e-06 58.2 230 24.3
Gohir.A09G111300 Gossypium hirsutum HOM05D006655 ORTHO05D007986 2.2e-06 57.4 223 25.1
Cc06_g02520 Coffea canephora HOM05D003730 ORTHO05D004458 2.9e-06 57.0 203 27.1
HPP92_025004 Vanilla planifolia HOM05D006655 ORTHO05D007986 2.9e-06 57.0 268 25.0
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 2.9e-06 57.0 230 25.2
CDE04G1817 Ceratophyllum demersum HOM05D003730 ORTHO05D004458 3.8e-06 56.6 241 24.5
CDE08G0434 Ceratophyllum demersum HOM05D006655 ORTHO05D007986 6.5e-06 55.8 223 26.0
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 8.5e-06 55.5 45 48.9


User provided reference genes

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