Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0656 Ceratophyllum demersum HOM05D000120 ORTHO05D130043 5.4e-53 210.7 104 100.0
CDE04G2891 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 5.5e-13 77.8 41 95.1
CDE10G0638 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 6.1e-12 74.3 41 90.2
CDE03G0260 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 1.0e-11 73.6 41 85.4
CDE04G3175 Ceratophyllum demersum HOM05D000120 ORTHO05D129606 2.0e-10 69.3 44 84.1
CDE09G0553 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 2.0e-10 69.3 33 87.9
Cpa.g.c27379.2 Carica papaya HOM05D000120 ORTHO05D000068 2.5e-10 68.9 58 60.3
MBI07_g23932_MAGBIO Magnolia biondii HOM05D000120 ORTHO05D000068 5.7e-10 67.8 32 90.6
Nn3g19022 Nelumbo nucifera HOM05D000120 ORTHO05D000068 5.7e-10 67.8 51 66.7
MBI06_g05052_MAGBIO Magnolia biondii HOM05D000120 ORTHO05D000068 7.4e-10 67.4 32 90.6
Potri.001G092200 Populus trichocarpa HOM05D000120 ORTHO05D000068 7.4e-10 67.4 51 64.7
Cfa023582 Carpinus fangiana HOM05D000120 ORTHO05D000068 9.7e-10 67.0 58 60.3
Haze_08620 Corylus avellana HOM05D000120 ORTHO05D000068 9.7e-10 67.0 57 63.2
Duzib068G1321 Durio zibethinus HOM05D000120 ORTHO05D000068 1.3e-09 66.6 51 64.7
Potri.003G139600 Populus trichocarpa HOM05D000120 ORTHO05D000068 1.7e-09 66.2 58 58.6
Prupe.5G118000 Prunus persica HOM05D000120 ORTHO05D000068 1.7e-09 66.2 51 62.7
TAR374G1662 Trochodendron aralioides HOM05D000120 ORTHO05D000068 1.7e-09 66.2 32 87.5
CiPaw.12G083700 Carya illinoinensis HOM05D000120 ORTHO05D000068 2.2e-09 65.9 58 58.6
Hma1.2p1_0359F.1_g135290 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 2.2e-09 65.9 58 58.6
Sabra01G0068500 Salix brachista HOM05D000120 ORTHO05D000068 2.2e-09 65.9 51 64.7
Sabra03G0100700 Salix brachista HOM05D000120 ORTHO05D000068 2.2e-09 65.9 58 58.6
MSTRG.25669 Avicennia marina HOM05D000120 ORTHO05D000068 2.8e-09 65.5 51 64.7
Duzib205G0829 Durio zibethinus HOM05D000120 ORTHO05D000068 2.8e-09 65.5 44 68.2
Eucgr.E00858 Eucalyptus grandis HOM05D000120 ORTHO05D000068 2.8e-09 65.5 57 61.4
TAR629G2704 Trochodendron aralioides HOM05D000120 ORTHO05D000068 2.8e-09 65.5 32 84.4
CSS0024186 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 3.7e-09 65.1 51 64.7
CSS0025936 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 3.7e-09 65.1 51 64.7
Hund14225 Selenicereus undatus HOM05D000120 ORTHO05D000068 3.7e-09 65.1 99 41.4
unitig_748.g8128 Utricularia gibba HOM05D000120 ORTHO05D000068 3.7e-09 65.1 51 64.7
Aqoxy5G04213 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 4.8e-09 64.7 32 84.4
ClCG07G015000 Citrullus lanatus HOM05D000120 ORTHO05D000068 4.8e-09 64.7 51 62.7
CsaV3_4G006540 Cucumis sativus L. HOM05D000120 ORTHO05D000068 4.8e-09 64.7 51 62.7
Duzib084G1103 Durio zibethinus HOM05D000120 ORTHO05D000068 4.8e-09 64.7 51 62.7
PGR042G3492 Punica granatum HOM05D000120 ORTHO05D000068 4.8e-09 64.7 55 61.8
Hund11392 Selenicereus undatus HOM05D000120 ORTHO05D000068 4.8e-09 64.7 51 64.7
SGA_v2.0_scaffold96G28964 Striga asiatica HOM05D000120 ORTHO05D000068 4.8e-09 64.7 51 62.7
unitig_37.g12135 Utricularia gibba HOM05D000120 ORTHO05D000068 4.8e-09 64.7 51 62.7
AL6G45190 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
AT4G11050 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Cc08_g16000 Coffea canephora HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Eucgr.D01733 Eucalyptus grandis HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 64.7
Thhalv10028514m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Gohir.A02G101600 Gossypium hirsutum HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Gohir.D03G082700 Gossypium hirsutum HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Gorai.003G080800 Gossypium raimondii HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Sp6g06410 Schrenkiella parvula HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Thecc.03G297000 Theobroma cacao HOM05D000120 ORTHO05D000068 6.3e-09 64.3 51 62.7
Carub.0006s2982 Capsella rubella HOM05D000120 ORTHO05D000068 8.2e-09 63.9 51 62.7
CiPaw.11G121900 Carya illinoinensis HOM05D000120 ORTHO05D000068 8.2e-09 63.9 58 56.9
Ca_17484_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 8.2e-09 63.9 51 60.8
Ca_17509_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 8.2e-09 63.9 51 60.8
Dinv38837 Davidia involucrata HOM05D000120 ORTHO05D000068 8.2e-09 63.9 51 62.7
ECA233G2819 Erigeron canadensis HOM05D000120 ORTHO05D000068 8.2e-09 63.9 58 56.9
Manes.02G010600 Manihot esculenta HOM05D000120 ORTHO05D000068 8.2e-09 63.9 51 60.8
Nn1g01883 Nelumbo nucifera HOM05D000120 ORTHO05D000068 8.2e-09 63.9 32 84.4
SGA_v2.0_scaffold305G47967 Striga asiatica HOM05D000120 ORTHO05D000068 8.2e-09 63.9 51 62.7
TAR375G0435 Trochodendron aralioides HOM05D000120 ORTHO05D000068 8.2e-09 63.9 32 81.2
TAR375G0753 Trochodendron aralioides HOM05D000120 ORTHO05D000068 8.2e-09 63.9 32 81.2
ATR0188G024 Amborella trichopoda HOM05D000120 ORTHO05D000068 1.1e-08 63.5 32 84.4
Aqoxy7G00118 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 1.1e-08 63.5 32 81.2
MSTRG.11928 Avicennia marina HOM05D000120 ORTHO05D000068 1.1e-08 63.5 51 62.7
Lj2C168T15 Lonicera japonica HOM05D000120 ORTHO05D000068 1.1e-08 63.5 58 55.2
PGR031G0032 Punica granatum HOM05D000120 ORTHO05D000068 1.1e-08 63.5 51 60.8
Sed0016638 Sechium edule HOM05D000120 ORTHO05D000068 1.1e-08 63.5 51 60.8
COL.COLO4_10692 Corchorus olitorius HOM05D000120 ORTHO05D000068 1.4e-08 63.2 51 60.8
Oeu038558.1 Olea europaea HOM05D000120 ORTHO05D000068 1.4e-08 63.2 57 57.9
Actinidia22151 Actinidia chinensis HOM05D000120 ORTHO05D000068 1.8e-08 62.8 51 60.8
BcaB01g02722 Brassica carinata HOM05D000120 ORTHO05D000068 1.8e-08 62.8 43 69.8
BcaC01g04646 Brassica carinata HOM05D000120 ORTHO05D000068 1.8e-08 62.8 43 69.8
A03p29170 Brassica napus HOM05D000120 ORTHO05D000068 1.8e-08 62.8 43 69.8
C03p35330 Brassica napus HOM05D000120 ORTHO05D000068 1.8e-08 62.8 43 69.8
BolC3t15843H Brassica oleracea HOM05D000120 ORTHO05D000068 1.8e-08 62.8 43 69.8
BraA03t12112Z Brassica rapa HOM05D000120 ORTHO05D000068 1.8e-08 62.8 43 69.8
CSS0026103 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 1.8e-08 62.8 55 58.2
MELO3C016287.2 Cucumis melo HOM05D000120 ORTHO05D000068 1.8e-08 62.8 32 81.2
Gohir.A08G096900 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.8e-08 62.8 51 58.8
Gohir.D08G130700 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.8e-08 62.8 51 58.8
Gorai.004G133700 Gossypium raimondii HOM05D000120 ORTHO05D000068 1.8e-08 62.8 51 58.8
Lsat_1_v5_gn_6_12340 Lactuca sativa HOM05D000120 ORTHO05D000068 1.8e-08 62.8 99 40.4
MD14G1128000 Malus domestica HOM05D000120 ORTHO05D000068 1.8e-08 62.8 44 65.9
Oeu063529.1 Olea europaea HOM05D000120 ORTHO05D000068 1.8e-08 62.8 51 62.7
RcHm_v2.0_Chr7g0194991 Rosa chinensis HOM05D000120 ORTHO05D000068 1.8e-08 62.8 51 58.8
vmacro11430 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 1.8e-08 62.8 35 74.3
GSVIVG01019523001 Vitis vinifera HOM05D000120 ORTHO05D000068 1.8e-08 62.8 32 84.4
DCAR_005042 Daucus carota HOM05D000120 ORTHO05D000068 2.4e-08 62.4 51 60.8
Dinv37537 Davidia involucrata HOM05D000120 ORTHO05D000068 2.4e-08 62.4 57 57.9
Rhsim07G0082600 Rhododendron simsii HOM05D000120 ORTHO05D000068 2.4e-08 62.4 51 62.7
Aa31LG9G11120 Aethionema arabicum HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 60.8
arahy.Tifrunner.gnm1.ann1.L3DN4L Arachis hypogaea HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
arahy.Tifrunner.gnm1.ann1.PKFN9U Arachis hypogaea HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
DCAR_027705 Daucus carota HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 60.8
Glyma.05G216400 Glycine max HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
Glyma.08G022300 Glycine max HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
Lj4g0005410 Lotus japonicus HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
Medtr8g099410 Medicago truncatula HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
Phvul.002G297600 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
TPR.G3386 Trifolium pratense HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
TWI60G0793 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
TWI81G0028 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
vmacro13900 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 3.1e-08 62.0 58 56.9
VMungo0251G2183 Vigna mungo HOM05D000120 ORTHO05D000068 3.1e-08 62.0 51 58.8
HanXRQChr02g0047901 Helianthus annuus HOM05D000120 ORTHO05D000068 4.1e-08 61.6 58 55.2
Lalb_Chr09g0332471 Lupinus albus HOM05D000120 ORTHO05D000068 4.1e-08 61.6 99 38.4
Manes.01G049360 Manihot esculenta HOM05D000120 ORTHO05D000068 4.1e-08 61.6 51 58.8
Oeu009952.1 Olea europaea HOM05D000120 ORTHO05D000068 4.1e-08 61.6 44 65.9
QL02p030782 Quercus lobata HOM05D000120 ORTHO05D000068 4.1e-08 61.6 58 55.2
Lalb_Chr05g0224171 Lupinus albus HOM05D000120 ORTHO05D000068 5.3e-08 61.2 51 58.8
MD06G1105900 Malus domestica HOM05D000120 ORTHO05D000068 5.3e-08 61.2 32 78.1
Peaxi162Scf00117g01132 Petunia axillaris HOM05D000120 ORTHO05D000068 5.3e-08 61.2 51 60.8
Sc01g0010280 Simmondsia chinensis HOM05D000120 ORTHO05D000068 5.3e-08 61.2 44 63.6
PGSC0003DMG400004992 Solanum tuberosum HOM05D000120 ORTHO05D000068 5.3e-08 61.2 51 60.8
ECA240G1717 Erigeron canadensis HOM05D000120 ORTHO05D000068 6.9e-08 60.8 51 58.8
Thhalv10023353m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 6.9e-08 60.8 51 58.8
Psat7g026560 Pisum sativum HOM05D000120 ORTHO05D000068 6.9e-08 60.8 51 56.9
Nitab4.5_0001231g0080 Nicotiana tabacum HOM05D000120 ORTHO05D000068 9.1e-08 60.5 51 58.8
THA.LOC104814993 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 9.1e-08 60.5 51 58.8
C09p17260 Brassica napus HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 58.8
C09p17830 Brassica napus HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 58.8
BolC9t54628H Brassica oleracea HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 58.8
MELO3C005748.2 Cucumis melo HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 58.8
CsaV3_5G002050 Cucumis sativus L. HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 58.8
Gohir.A12G236200 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 56.9
Gorai.008G254000 Gossypium raimondii HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 56.9
HanXRQChr07g0190921 Helianthus annuus HOM05D000120 ORTHO05D000068 1.2e-07 60.1 58 53.4
Nitab4.5_0004010g0070 Nicotiana tabacum HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 58.8
THA.LOC104809332 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 1.2e-07 60.1 51 56.9
AL2G10460 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 56.9
AT1G64390 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 56.9
BcaC04g22566 Brassica carinata HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 58.8
BcaC04g22621 Brassica carinata HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 58.8
BolC9t54681H Brassica oleracea HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 58.8
Carub.0002s0038 Capsella rubella HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 56.9
Gohir.D12G237400 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 56.9
HanXRQChr13g0415141 Helianthus annuus HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 56.9
Nitab4.5_0005537g0040 Nicotiana tabacum HOM05D000120 ORTHO05D000068 1.5e-07 59.7 51 56.9
BcaB07g31462 Brassica carinata HOM05D000120 ORTHO05D000068 2.0e-07 59.3 43 65.1
BcaB07g31503 Brassica carinata HOM05D000120 ORTHO05D000068 2.0e-07 59.3 43 65.1
A09p14340 Brassica napus HOM05D000120 ORTHO05D000068 2.0e-07 59.3 43 65.1
BraA09t37081Z Brassica rapa HOM05D000120 ORTHO05D000068 2.0e-07 59.3 43 65.1
BraA09t37119Z Brassica rapa HOM05D000120 ORTHO05D000068 2.0e-07 59.3 43 65.1
Ciclev10019301m.g Citrus clementina HOM05D000120 ORTHO05D000068 2.0e-07 59.3 57 54.4
Migut.A00660 Erythranthe guttata HOM05D000120 ORTHO05D000068 2.0e-07 59.3 51 58.8
FvH4_5g04490 Fragaria vesca HOM05D000120 ORTHO05D000068 2.0e-07 59.3 51 56.9
FAN04G1038 Fragaria x ananassa HOM05D000120 ORTHO05D000068 2.0e-07 59.3 51 56.9
FAN13G0161 Fragaria x ananassa HOM05D000120 ORTHO05D000068 2.0e-07 59.3 51 56.9
FAN18G0665 Fragaria x ananassa HOM05D000120 ORTHO05D000068 2.0e-07 59.3 51 56.9
Sp2g00340 Schrenkiella parvula HOM05D000120 ORTHO05D000068 2.0e-07 59.3 43 65.1
Ah.12g052500 Amaranthus hybridus HOM05D000120 ORTHO05D000068 2.6e-07 58.9 51 58.8
Lsat_1_v5_gn_3_10580 Lactuca sativa HOM05D000120 ORTHO05D000068 2.6e-07 58.9 85 41.2
Nitab4.5_0000726g0070 Nicotiana tabacum HOM05D000120 ORTHO05D000068 2.6e-07 58.9 51 58.8
Oeu054020.1 Olea europaea HOM05D000120 ORTHO05D000068 2.6e-07 58.9 44 63.6
Solyc08g082250.3 Solanum lycopersicum HOM05D000120 ORTHO05D000068 2.6e-07 58.9 51 56.9
Solyc12g055970.3 Solanum lycopersicum HOM05D000120 ORTHO05D000068 2.6e-07 58.9 51 58.8
Sopen08g030520 Solanum pennellii HOM05D000120 ORTHO05D000068 2.6e-07 58.9 51 56.9
Sopen12g024440 Solanum pennellii HOM05D000120 ORTHO05D000068 2.6e-07 58.9 51 58.8
PGSC0003DMG400012288 Solanum tuberosum HOM05D000120 ORTHO05D000068 2.6e-07 58.9 58 51.7
Actinidia27320 Actinidia chinensis HOM05D000120 ORTHO05D000068 3.4e-07 58.5 51 56.9
EL10Ac5g12909 Beta vulgaris HOM05D000120 ORTHO05D000068 3.4e-07 58.5 34 70.6
CARHR046540 Cardamine hirsuta HOM05D000120 ORTHO05D000068 3.4e-07 58.5 51 54.9
SalBow1G1225 Salvia bowleyana HOM05D000120 ORTHO05D000068 3.4e-07 58.5 51 54.9
HPP92_003992 Vanilla planifolia HOM05D000120 ORTHO05D000068 3.4e-07 58.5 57 56.1
ClCG01G001910 Citrullus lanatus HOM05D000120 ORTHO05D000068 4.5e-07 58.2 51 56.9
Atru.chr9.2006 Acer truncatum HOM05D000120 ORTHO05D000068 5.9e-07 57.8 51 54.9
HanXRQChr17g0535261 Helianthus annuus HOM05D000120 ORTHO05D000068 5.9e-07 57.8 51 56.9
Peaxi162Scf00074g00926 Petunia axillaris HOM05D000120 ORTHO05D000068 5.9e-07 57.8 51 56.9
A09p14730 Brassica napus HOM05D000120 ORTHO05D000068 1.0e-06 57.0 43 62.8
ECA246G0386 Erigeron canadensis HOM05D000120 ORTHO05D000068 1.0e-06 57.0 51 54.9
FAN18G1724 Fragaria x ananassa HOM05D000120 ORTHO05D000068 1.0e-06 57.0 51 54.9
Sed0005256 Sechium edule HOM05D000120 ORTHO05D000068 1.0e-06 57.0 51 56.9
Sc22g0005040 Simmondsia chinensis HOM05D000120 ORTHO05D000068 1.0e-06 57.0 44 61.4
Lsat_1_v5_gn_6_84061 Lactuca sativa HOM05D000120 ORTHO05D000068 1.3e-06 56.6 51 54.9
PSO675G0527 Papaver somniferum HOM05D000120 ORTHO05D000068 1.3e-06 56.6 51 54.9
Sed0005857 Sechium edule HOM05D000120 ORTHO05D000068 1.3e-06 56.6 51 54.9
AUR62010833 Chenopodium quinoa HOM05D000120 ORTHO05D000068 1.7e-06 56.2 51 54.9
AUR62019831 Chenopodium quinoa HOM05D000120 ORTHO05D000068 1.7e-06 56.2 51 54.9
PSO541G3125 Papaver somniferum HOM05D000120 ORTHO05D000068 1.7e-06 56.2 51 54.9
Aa31LG2G1400 Aethionema arabicum HOM05D000120 ORTHO05D000068 2.2e-06 55.8 44 56.8
FAN08G0584 Fragaria x ananassa HOM05D000120 ORTHO05D000068 2.2e-06 55.8 51 54.9
CANSAT21G0511 Cannabis sativa HOM05D000120 ORTHO05D000068 5.0e-06 54.7 51 51.0
CANSAT21G1625 Cannabis sativa HOM05D000120 ORTHO05D000068 5.0e-06 54.7 51 51.0


User provided reference genes

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