Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 5.6e-115 417.5 198 100.0
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 70.7
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 65.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 68.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 67.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 67.7
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 7.9e-77 290.8 198 65.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 65.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 65.7
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 66.7
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 65.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 64.1
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 65.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 65.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 64.6
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 65.2
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 64.6
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 63.6
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 65.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 4.8e-74 281.6 198 64.6
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 63.1
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 66.7
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 63.1
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 63.1
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 63.1
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 63.1
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 64.1
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 64.6
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 64.6
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 63.1
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 64.1
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 64.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.9e-73 277.7 198 63.1
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 9.0e-73 277.3 198 63.1
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.2e-72 276.9 198 66.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.0e-72 276.2 198 63.1
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.6e-72 275.8 198 61.6
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 4.5e-72 275.0 198 63.6
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 5.8e-72 274.6 198 61.6
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 7.6e-72 274.2 198 64.6
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 61.1
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.7e-71 273.1 198 63.6
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.7e-71 273.1 199 64.3
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 3.8e-71 271.9 198 60.6
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.1e-70 270.4 200 63.0
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.4e-70 270.0 198 60.6
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.2e-70 268.9 199 64.3
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.2e-70 268.9 206 60.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.2e-70 268.9 198 61.6
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 4.2e-70 268.5 198 60.6
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.2e-70 268.5 206 59.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 4.2e-70 268.5 198 63.6
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.5e-70 268.1 198 62.6
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.2e-69 266.9 198 61.1
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-69 266.9 198 60.1
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.6e-69 266.5 198 60.6
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.6e-69 266.5 198 60.6
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.1e-69 266.2 198 60.1
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 3.5e-69 265.4 198 60.6
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 3.5e-69 265.4 216 57.4
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 6.0e-69 264.6 198 62.6
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.3e-68 263.5 200 63.0
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.8e-68 263.1 198 60.1
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.3e-68 262.7 198 59.6
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 3.0e-68 262.3 198 60.6
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 3.9e-68 261.9 198 60.6
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 3.9e-68 261.9 198 61.1
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 3.9e-68 261.9 198 59.6
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 5.1e-68 261.5 198 60.1
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 5.1e-68 261.5 198 59.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 5.1e-68 261.5 234 53.4
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.7e-68 261.2 234 53.0
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.1e-67 260.4 198 59.1
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-67 259.6 198 59.6
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.9e-67 259.6 198 59.6
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.6e-67 258.1 198 58.1
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 7.4e-67 257.7 198 59.1
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 9.6e-67 257.3 198 58.6
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.6e-66 256.5 198 59.1
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.6e-66 256.5 198 59.6
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 1.6e-66 256.5 198 58.1
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.1e-66 256.1 198 58.1
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 6.2e-66 254.6 198 58.1
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 6.2e-66 254.6 198 57.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 6.2e-66 254.6 241 51.9
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.4e-65 253.4 198 57.6
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.4e-65 253.4 233 52.8
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 5.3e-65 251.5 198 57.6
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 6.9e-65 251.1 198 56.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.4e-64 248.8 173 64.7
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 7.6e-64 247.7 173 64.7
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 3.8e-63 245.4 216 54.2
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 4.9e-63 245.0 198 56.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 8.4e-63 244.2 253 49.0
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.1e-62 243.8 219 53.4
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 2.5e-62 242.7 180 62.2
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.5e-62 242.7 236 49.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 3.2e-62 242.3 198 55.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 5.5e-62 241.5 171 62.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 5.5e-62 241.5 198 57.6
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.2e-61 240.4 170 64.7
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 7.9e-61 237.7 188 59.6
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.3e-60 236.9 130 87.7
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-60 236.9 173 65.3
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 6.3e-58 228.0 191 54.5
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.6e-56 222.6 198 54.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 2.6e-56 222.6 198 49.0
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 1.7e-55 219.9 193 51.8
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.5e-55 218.0 198 48.5
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.2e-53 213.8 159 59.1
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 3.5e-53 212.2 155 61.3
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.9e-52 208.8 166 58.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.9e-51 206.5 194 49.5
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.7e-51 204.9 198 49.5
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 9.0e-49 197.6 135 68.1
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 1.4e-46 190.3 145 58.6
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 1.8e-41 173.3 160 51.2
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.5e-40 170.2 134 54.5
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 5.0e-39 165.2 122 60.7
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.9e-38 163.3 118 59.3
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.9e-38 163.3 120 56.7
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.7e-37 159.5 183 47.0
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 7.9e-37 157.9 110 69.1
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 7.9e-37 157.9 115 57.4
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 5.1e-36 155.2 130 51.5
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.1e-35 154.1 115 55.7
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 7.4e-35 151.4 145 48.3
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 8.2e-34 147.9 115 58.3
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.8e-33 146.7 143 50.3
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 8.0e-29 131.3 143 41.3
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 8.8e-28 127.9 87 63.2
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 8.2e-26 121.3 88 67.0
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 2.0e-24 116.7 77 72.7
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 71.4
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.8e-23 112.5 77 71.4
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.1e-22 110.9 77 70.1
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 2.5e-22 109.8 77 68.8
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.5e-22 108.6 83 61.4
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.6e-21 107.1 77 66.2
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 4.7e-21 105.5 77 67.5
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 4.7e-21 105.5 77 67.5
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.3e-20 103.2 124 41.9
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 2.3e-20 103.2 75 64.0
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.0e-19 100.1 69 68.1
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.6e-19 99.8 75 64.0
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.2e-18 96.7 60 68.3
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.1e-17 92.8 72 50.0
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.0e-16 90.1 72 62.5
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-15 87.4 145 40.7
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 5.0e-15 85.5 62 67.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 1.1e-14 84.3 119 36.1
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 4.2e-14 82.4 185 25.4
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.2e-13 80.9 55 54.5
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 2.7e-13 79.7 91 35.2
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.5e-11 73.9 64 46.9
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 4.4e-11 72.4 60 53.3
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 7.5e-11 71.6 55 49.1
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 7.5e-11 71.6 103 38.8
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.7e-10 69.3 60 51.7
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 8.3e-10 68.2 59 50.8
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 8.3e-10 68.2 45 73.3
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 2.4e-09 66.6 64 48.4
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 3.1e-09 66.2 56 51.8


User provided reference genes

Program Settings