Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.1e-150 536.6 277 100.0
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.5e-134 483.0 277 91.0
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 1.9e-81 306.6 244 65.2
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 3.4e-78 295.8 263 60.1
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 5.8e-78 295.0 244 60.2
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 4.9e-77 292.0 244 59.8
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 3.0e-74 282.7 214 65.9
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.0e-74 282.7 260 58.1
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 4.3e-73 278.9 208 64.4
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 4.3e-73 278.9 208 63.9
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 4.3e-73 278.9 267 58.4
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 7.4e-73 278.1 236 61.4
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 4.8e-72 275.4 205 64.4
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 6.2e-72 275.0 285 50.2
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.8e-71 273.5 262 55.0
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 1.8e-71 273.5 269 54.3
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 4.0e-71 272.3 203 65.5
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 5.3e-71 271.9 207 63.8
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 6.9e-71 271.6 256 59.4
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 9.0e-71 271.2 253 57.3
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 9.0e-71 271.2 205 62.4
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 1.5e-70 270.4 205 60.5
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 1.5e-70 270.4 249 55.8
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.0e-70 270.0 201 61.7
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 2.6e-70 269.6 276 51.1
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 2.6e-70 269.6 278 51.1
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 3.4e-70 269.2 238 58.8
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 4.5e-70 268.9 261 53.3
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 7.6e-70 268.1 284 53.2
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.0e-69 267.7 229 58.1
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.3e-69 267.3 201 63.2
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.7e-69 266.9 268 55.2
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 2.9e-69 266.2 226 57.5
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 4.9e-69 265.4 228 57.9
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 6.5e-69 265.0 228 57.9
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 6.5e-69 265.0 242 55.4
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 6.5e-69 265.0 276 51.8
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 8.4e-69 264.6 205 62.4
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 8.4e-69 264.6 201 60.7
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 1.1e-68 264.2 205 62.0
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 1.1e-68 264.2 205 62.0
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 1.9e-68 263.5 292 52.1
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 1.9e-68 263.5 296 51.4
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 4.2e-68 262.3 266 55.6
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 4.2e-68 262.3 232 58.2
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 5.5e-68 261.9 252 54.4
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 7.1e-68 261.5 201 60.2
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 7.1e-68 261.5 221 60.6
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 7.1e-68 261.5 232 58.2
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 1.2e-67 260.8 253 54.5
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 3.5e-67 259.2 266 52.3
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 7.9e-67 258.1 268 54.5
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 1.0e-66 257.7 266 51.1
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 1.3e-66 257.3 204 60.3
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 1.8e-66 256.9 258 52.7
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 2.3e-66 256.5 203 62.1
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 3.0e-66 256.1 226 58.4
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 8.7e-66 254.6 217 58.5
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 8.7e-66 254.6 272 51.5
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 1.5e-65 253.8 281 50.5
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 7.4e-65 251.5 241 54.8
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 9.6e-65 251.1 268 51.5
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 1.3e-64 250.8 254 53.9
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 4.8e-64 248.8 204 60.8
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 6.3e-64 248.4 204 59.8
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 1.8e-63 246.9 206 59.7
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 1.8e-63 246.9 200 60.0
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 5.3e-63 245.4 272 50.7
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 6.9e-63 245.0 253 54.9
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 9.0e-63 244.6 201 62.2
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 2.6e-62 243.0 214 58.4
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.4e-62 242.7 230 55.2
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.9e-62 241.9 245 56.3
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 7.6e-62 241.5 253 54.9
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 7.6e-62 241.5 186 64.0
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 2.2e-61 240.0 257 49.4
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 5.0e-61 238.8 233 52.4
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 6.5e-61 238.4 176 68.2
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.1e-60 237.7 246 52.0
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 3.2e-60 236.1 210 55.2
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.5e-60 235.3 267 52.1
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 1.6e-59 233.8 204 57.4
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 1.0e-58 231.1 209 55.5
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 2.3e-58 229.9 176 65.9
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 5.1e-58 228.8 180 63.3
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 1.9e-57 226.9 180 62.2
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 3.3e-57 226.1 188 57.4
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 4.3e-57 225.7 241 52.7
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 4.3e-57 225.7 188 58.5
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.2e-56 223.4 180 58.9
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 8.2e-56 221.5 213 59.2
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 1.9e-52 210.3 193 59.6
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 9.4e-52 208.0 232 52.2
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 1.6e-51 207.2 242 47.1
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 8.8e-50 201.4 240 48.3
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 8.8e-50 201.4 254 48.8
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 2.2e-48 196.8 226 48.7
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 3.1e-47 193.0 240 46.2
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.5e-44 183.3 222 45.9
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 4.4e-41 172.6 265 38.9
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 7.4e-41 171.8 166 52.4
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 4.1e-39 166.0 237 40.9
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.0e-37 161.4 216 43.5
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 1.3e-37 161.0 122 63.1
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 3.8e-37 159.5 178 49.4
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 6.5e-37 158.7 217 41.5
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.2e-36 156.4 288 40.3
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 5.5e-36 155.6 315 37.8
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.2e-33 147.9 137 57.7
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 4.4e-33 146.0 132 56.1
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 4.1e-31 139.4 280 35.4
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.2e-30 137.9 165 41.8
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.2e-30 137.9 84 76.2
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 2.0e-30 137.1 84 76.2
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.1e-28 131.3 261 35.6
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 2.5e-28 130.2 84 70.2
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.2e-28 129.8 91 68.1
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 5.7e-25 119.0 182 41.8
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 8.3e-24 115.2 156 46.2
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.0e-21 108.2 199 43.2
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 2.5e-20 103.6 101 45.5
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.4e-15 87.0 62 64.5
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 8.0e-11 72.0 185 34.1
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 4.0e-10 69.7 57 54.4
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 4.1e-07 59.7 52 55.8


User provided reference genes

Program Settings