Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.9e-233 810.4 399 100.0
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.3e-207 723.8 427 85.0
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.9e-144 515.4 428 60.0
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 7.7e-140 501.1 428 59.1
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 3.2e-138 495.7 431 59.2
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.6e-137 493.4 428 57.9
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 4.7e-137 491.9 428 58.4
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 8.0e-137 491.1 428 58.6
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 4.4e-135 485.3 432 57.2
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 5.7e-135 485.0 432 57.2
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.8e-134 481.9 428 57.5
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 8.3e-134 481.1 431 55.9
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 1.8e-133 479.9 430 56.7
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.8e-133 479.9 432 57.2
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.4e-133 479.6 429 55.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 7.0e-133 478.0 438 56.6
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.7e-132 476.1 429 54.8
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.5e-132 475.7 428 57.7
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 5.9e-132 474.9 438 55.5
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.3e-131 473.8 434 56.5
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.7e-131 473.4 429 56.4
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.7e-131 473.4 431 56.6
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.2e-131 473.0 430 56.3
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 2.2e-131 473.0 430 56.3
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.8e-131 472.2 437 56.3
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 5.0e-131 471.9 429 56.4
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 6.5e-131 471.5 428 57.0
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.9e-130 469.9 439 54.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.9e-130 469.9 401 58.6
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 7.2e-130 468.0 430 55.6
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.2e-129 467.2 431 55.5
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.6e-129 466.8 427 56.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-129 466.8 425 57.9
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 4.7e-129 465.3 430 55.3
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 8.0e-129 464.5 433 55.7
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 8.0e-129 464.5 435 57.2
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.0e-128 464.2 432 56.5
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.4e-128 463.8 430 54.4
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.8e-128 463.4 435 57.2
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 2.3e-128 463.0 428 56.1
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.0e-128 462.6 425 56.0
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 3.0e-128 462.6 430 55.6
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.2e-128 461.8 433 55.7
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 8.8e-128 461.1 433 55.4
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 8.8e-128 461.1 431 55.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.5e-127 460.3 433 55.7
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.0e-127 459.9 432 55.3
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.6e-127 459.5 430 55.8
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 9.8e-127 457.6 440 53.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 9.8e-127 457.6 433 55.4
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.7e-126 456.8 426 54.9
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 3.7e-126 455.7 430 54.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.9e-126 455.3 434 54.6
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.9e-126 455.3 428 55.1
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 4.9e-126 455.3 430 54.7
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.9e-126 455.3 431 55.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 4.9e-126 455.3 430 55.1
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 6.3e-126 454.9 428 54.4
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 8.3e-126 454.5 431 55.2
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.1e-125 452.6 428 54.2
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 9.1e-125 451.1 428 54.0
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.6e-124 450.3 428 54.9
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.0e-124 449.9 428 54.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 4.5e-124 448.7 446 50.9
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 4.5e-124 448.7 428 54.7
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 4.5e-124 448.7 464 53.0
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.9e-124 448.4 427 54.8
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 7.7e-124 448.0 428 54.7
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.0e-123 447.6 428 54.9
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.7e-123 446.8 429 53.4
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 2.9e-123 446.0 508 47.0
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 3.8e-123 445.7 436 54.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.8e-123 445.7 428 54.2
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.5e-122 443.7 429 53.1
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.5e-122 443.7 429 52.9
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.3e-122 442.6 432 55.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 4.2e-122 442.2 434 54.8
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 7.2e-122 441.4 436 53.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 9.5e-122 441.0 428 54.0
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 9.5e-122 441.0 428 54.2
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.6e-121 440.3 432 54.2
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 2.1e-121 439.9 444 53.4
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 2.8e-121 439.5 429 53.1
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 3.6e-121 439.1 432 53.9
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.7e-121 438.7 432 54.2
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 8.0e-121 438.0 453 53.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.4e-120 437.2 433 55.7
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.8e-120 436.8 437 54.0
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.8e-120 436.8 407 54.3
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 1.8e-120 436.8 433 52.7
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.8e-120 436.8 430 53.7
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.3e-120 436.4 437 54.0
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.3e-120 436.4 437 54.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.3e-120 436.4 434 54.1
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 3.0e-120 436.0 431 53.8
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 5.2e-120 435.3 434 54.8
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 5.2e-120 435.3 436 55.7
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 8.9e-120 434.5 432 53.7
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-119 433.7 432 54.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-119 433.7 432 53.7
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.5e-119 433.7 433 55.0
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 4.4e-119 432.2 439 53.8
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 5.7e-119 431.8 501 47.9
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 1.7e-118 430.3 432 53.7
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-118 429.9 433 53.8
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.2e-118 429.9 430 52.8
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 4.9e-118 428.7 437 54.5
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.4e-117 427.2 463 49.9
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.4e-117 427.2 443 51.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 7.0e-117 424.9 437 54.0
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 7.0e-117 424.9 432 51.4
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 7.0e-117 424.9 433 54.3
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.6e-116 423.7 436 53.7
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 7.8e-116 421.4 453 51.0
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.7e-115 420.2 419 53.7
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 8.6e-115 417.9 449 50.1
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.9e-114 416.8 434 53.9
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.6e-114 415.2 443 51.2
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.8e-113 412.9 433 52.9
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 8.0e-113 411.4 435 53.3
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.1e-112 409.5 378 55.8
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 6.8e-112 408.3 435 52.0
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.4e-110 401.7 439 51.0
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 3.0e-107 392.9 428 50.0
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.6e-105 386.0 433 51.5
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 1.2e-103 380.9 390 52.1
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.1e-101 372.5 414 48.6
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 8.6e-99 364.8 462 46.1
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.2e-97 360.9 455 45.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.6e-97 360.5 446 46.2
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.1e-97 360.1 436 46.1
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 6.8e-96 355.1 287 63.4
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 2.4e-88 330.1 446 44.2
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 8.9e-88 328.2 256 62.5
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.1e-85 321.2 442 42.8
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.6e-84 317.4 489 40.7
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 9.6e-74 281.6 326 48.5
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.4e-71 273.1 309 48.2
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 8.4e-70 268.5 304 48.0
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.7e-68 263.5 297 47.1
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 3.3e-66 256.5 193 65.8
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.1e-65 253.8 218 61.5
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.8e-65 253.4 460 38.7
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.8e-65 252.7 192 65.1
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 4.0e-64 249.6 192 67.7
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 4.0e-64 249.6 305 48.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.1e-56 223.4 484 33.9
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 8.5e-46 188.7 136 68.4
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 6.1e-44 182.6 128 69.5
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.0e-43 181.8 170 55.3
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.4e-43 181.4 198 49.5
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.7e-41 174.5 235 43.4
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 2.1e-36 157.5 270 36.7
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 4.7e-36 156.4 116 63.8
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.4e-35 154.8 264 35.2
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 2.0e-34 151.0 153 52.9
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 5.7e-34 149.4 166 43.4
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.7e-33 147.9 227 39.2
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.7e-33 147.9 335 33.4
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.4e-32 144.1 242 36.4
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.2e-31 141.7 166 44.6
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.6e-31 141.4 154 49.4
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 8.8e-27 125.6 219 35.2
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.4e-24 117.5 76 73.7
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.7e-23 114.0 79 67.1
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-20 105.1 146 39.7
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.0e-14 85.5 74 63.5
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 4.7e-12 76.6 110 45.5
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 3.4e-10 70.5 51 66.7
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.4e-10 70.5 73 50.7
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.7e-09 68.2 46 76.1
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 5.4e-08 63.2 173 32.9
Pp3c7_14100 Physcomitrium patens HOM05D002054 ORTHO05D004936 3.5e-07 60.5 180 32.2
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.3e-06 58.5 59 47.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.3e-06 57.8 126 28.6
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 3.8e-06 57.0 95 35.8
Phvul.009G098700 Phaseolus vulgaris HOM05D002054 ORTHO05D004936 5.0e-06 56.6 154 31.8
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 5.0e-06 56.6 36 69.4


User provided reference genes

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