Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 6.1e-91 337.4 165 100.0
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.9e-85 318.5 165 93.9
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.6e-67 259.6 162 77.2
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.8e-66 256.1 162 76.5
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 6.8e-66 254.2 161 77.0
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.2e-65 253.4 154 79.2
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.5e-65 253.1 152 79.6
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.6e-65 252.3 160 76.2
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 3.4e-65 251.9 152 77.6
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-65 251.5 151 80.8
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 7.5e-65 250.8 161 75.2
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 9.8e-65 250.4 164 75.6
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 9.8e-65 250.4 164 75.0
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 9.8e-65 250.4 152 78.9
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.3e-64 250.0 165 74.5
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-64 250.0 164 75.0
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.3e-64 250.0 162 76.5
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.3e-64 250.0 162 75.9
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.7e-64 249.6 159 76.1
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.7e-64 249.6 152 77.6
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.7e-64 249.6 160 76.2
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.7e-64 249.6 162 76.5
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 2.9e-64 248.8 165 73.9
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 2.9e-64 248.8 165 73.9
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.9e-64 248.8 161 74.5
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.9e-64 248.8 151 80.1
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 3.7e-64 248.4 164 75.0
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 3.7e-64 248.4 162 75.3
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.7e-64 248.4 162 74.7
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 3.7e-64 248.4 151 78.8
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 3.7e-64 248.4 152 77.6
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 3.7e-64 248.4 162 74.7
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 3.7e-64 248.4 162 73.5
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.9e-64 248.1 162 75.3
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 4.9e-64 248.1 162 75.3
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 4.9e-64 248.1 161 74.5
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 4.9e-64 248.1 159 76.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 4.9e-64 248.1 161 76.4
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 4.9e-64 248.1 152 77.6
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 4.9e-64 248.1 155 76.8
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 4.9e-64 248.1 152 78.3
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.4e-64 247.7 162 75.3
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 6.4e-64 247.7 164 74.4
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 8.3e-64 247.3 151 78.8
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 8.3e-64 247.3 156 76.9
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 8.3e-64 247.3 164 75.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 1.4e-63 246.5 154 77.9
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.4e-63 246.5 150 78.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.4e-63 246.5 153 79.7
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.4e-63 246.5 162 74.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.4e-63 246.5 152 76.3
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.8e-63 246.1 152 76.3
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 1.8e-63 246.1 151 78.8
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.4e-63 245.7 159 74.8
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-63 245.7 164 74.4
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.4e-63 245.7 164 74.4
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 2.4e-63 245.7 162 75.9
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 3.2e-63 245.4 158 75.3
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 3.2e-63 245.4 162 72.8
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.2e-63 245.4 162 74.7
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 4.1e-63 245.0 158 74.1
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 4.1e-63 245.0 158 74.1
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 4.1e-63 245.0 156 76.3
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 4.1e-63 245.0 160 73.8
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 5.4e-63 244.6 161 73.9
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 5.4e-63 244.6 157 73.9
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 5.4e-63 244.6 159 74.8
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.2e-63 243.8 164 73.2
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 9.2e-63 243.8 161 73.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 9.2e-63 243.8 156 75.0
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-62 243.4 152 77.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.2e-62 243.4 172 71.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.6e-62 243.0 152 75.7
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.6e-62 243.0 164 73.2
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-62 243.0 164 73.2
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-62 243.0 164 73.2
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-62 242.7 157 74.5
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.0e-62 242.7 164 72.6
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.0e-62 242.7 164 72.6
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 2.0e-62 242.7 162 73.5
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.7e-62 242.3 152 75.7
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 2.7e-62 242.3 147 78.9
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.7e-62 242.3 145 77.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 3.5e-62 241.9 151 76.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.5e-62 241.9 164 73.2
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.5e-62 241.9 164 72.6
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.6e-62 241.5 151 77.5
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.6e-62 241.5 151 77.5
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.9e-62 241.1 158 74.1
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.8e-62 240.7 152 75.7
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.8e-62 240.7 152 75.0
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 7.8e-62 240.7 151 76.8
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.0e-61 240.4 154 75.3
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.0e-61 240.4 155 76.1
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.0e-61 240.4 154 76.0
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.0e-61 240.4 154 76.0
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.0e-61 240.4 156 73.1
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.3e-61 240.0 154 76.0
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.3e-61 240.0 154 75.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.7e-61 239.6 154 74.7
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.0e-61 238.8 153 75.2
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 3.9e-61 238.4 154 74.7
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.0e-61 238.0 147 74.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.6e-61 237.7 154 74.7
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 6.6e-61 237.7 163 72.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.6e-61 237.3 157 72.6
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 8.6e-61 237.3 149 73.8
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 8.6e-61 237.3 157 72.0
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.1e-60 236.9 157 72.6
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.5e-60 235.7 152 74.3
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 2.5e-60 235.7 173 69.9
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.3e-60 235.3 165 70.9
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.6e-60 234.6 151 74.8
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.3e-60 234.2 161 73.3
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.3e-60 234.2 161 73.3
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 7.3e-60 234.2 152 75.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 9.5e-60 233.8 162 69.8
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 9.5e-60 233.8 174 68.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.2e-59 233.4 154 72.1
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.2e-59 233.4 154 73.4
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 2.8e-59 232.3 159 71.1
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.6e-59 231.9 159 73.0
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 8.0e-59 230.7 165 71.5
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.0e-58 230.3 165 70.9
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.4e-58 229.9 152 71.7
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.8e-58 229.6 165 70.9
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.3e-58 229.2 159 72.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.3e-58 229.2 138 75.4
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.0e-58 228.4 150 73.3
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.2e-58 228.0 148 71.6
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 5.2e-58 228.0 154 73.4
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 6.8e-58 227.6 152 73.0
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.0e-57 226.1 154 72.7
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.0e-57 226.1 154 70.1
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 4.4e-57 224.9 154 72.1
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.3e-56 223.4 138 73.2
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.7e-54 215.7 226 53.1
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.5e-52 209.9 135 72.6
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.3e-52 208.8 143 67.8
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 7.5e-49 197.6 158 62.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 3.2e-47 192.2 122 72.1
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.1e-46 189.5 120 73.3
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 2.7e-46 189.1 164 60.4
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 5.1e-45 184.9 135 65.9
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 2.8e-43 179.1 130 66.9
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.8e-42 176.4 135 63.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 2.3e-42 176.0 134 62.7
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.1e-39 167.2 135 59.3
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 7.1e-39 164.5 109 78.9
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.1e-38 162.9 111 69.4
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 2.8e-35 152.5 91 79.1
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.1e-34 150.6 155 52.9
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 4.4e-33 145.2 140 51.4
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 2.9e-32 142.5 89 82.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 8.4e-32 141.0 120 55.0
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 7.8e-30 134.4 87 78.2
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.0e-29 134.0 116 63.8
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.8e-27 125.9 97 66.0
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.9e-26 121.3 99 58.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 3.4e-25 119.0 106 63.2
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-21 107.1 124 40.3
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 3.0e-21 105.9 71 71.8
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.7e-21 104.4 121 41.3
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-19 100.5 123 39.0
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.3e-19 100.5 123 39.0
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.6e-19 100.1 55 74.5
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 5.8e-17 91.7 96 45.8
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 5.8e-17 91.7 96 45.8
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.4e-16 88.2 158 39.9
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.3e-15 84.3 55 72.7
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.7e-14 82.8 58 63.8
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 3.5e-14 82.4 95 38.9
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.5e-12 77.0 95 47.4
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.7e-11 72.4 41 68.3
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.5e-09 65.5 47 53.2
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 7.6e-09 64.7 54 53.7


User provided reference genes

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