Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 3.4e-217 758.1 387 100.0
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.1e-186 656.8 386 87.6
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.9e-79 300.4 438 45.4
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 8.2e-70 268.5 440 41.1
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.9e-67 260.0 443 40.0
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.3e-62 244.6 445 40.0
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 4.8e-62 242.7 435 40.5
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.4e-61 241.1 430 39.3
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 6.9e-61 238.8 446 39.5
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 3.4e-60 236.5 452 39.4
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.4e-58 231.1 440 38.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.3e-56 223.8 446 37.7
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 5.1e-56 222.6 437 39.4
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 8.8e-56 221.9 433 38.1
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 8.8e-56 221.9 418 37.1
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 2.5e-55 220.3 426 37.8
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 4.3e-55 219.5 435 38.9
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.7e-54 217.6 438 39.0
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.7e-54 216.5 446 38.8
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 3.7e-54 216.5 428 37.6
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.7e-54 216.5 443 35.7
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.4e-53 214.5 442 38.7
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 5.3e-53 212.6 444 37.2
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 9.1e-53 211.8 441 38.3
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 9.1e-53 211.8 442 37.1
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.5e-52 211.1 429 37.5
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 2.6e-52 210.3 447 37.1
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 3.4e-52 209.9 437 37.3
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.4e-52 209.9 428 36.9
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.9e-52 209.1 432 38.0
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 7.7e-52 208.8 432 37.0
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.7e-52 208.8 421 37.1
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.7e-51 207.6 444 36.3
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.7e-51 207.6 419 37.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.7e-51 207.6 450 36.9
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 6.5e-51 205.7 423 36.9
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.1e-50 204.9 434 37.8
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.1e-50 204.9 432 37.0
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.4e-50 204.5 426 38.3
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.4e-50 204.5 439 36.9
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.9e-50 204.1 440 36.8
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 7.2e-50 202.2 442 36.0
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 9.4e-50 201.8 421 37.1
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 9.4e-50 201.8 419 36.5
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 9.4e-50 201.8 438 37.4
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 1.2e-49 201.4 448 34.2
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.2e-49 201.4 436 36.5
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.7e-49 200.3 438 37.4
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 3.6e-49 199.9 418 35.6
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 3.6e-49 199.9 435 36.1
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.0e-48 198.4 410 37.3
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.8e-48 197.6 446 34.8
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.8e-48 197.6 444 34.5
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.3e-48 197.2 435 35.2
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 3.9e-48 196.4 445 35.1
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 5.1e-48 196.1 424 35.6
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.1e-48 196.1 423 37.4
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 8.8e-48 195.3 327 40.7
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.4e-47 193.0 416 33.4
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 5.7e-47 192.6 449 34.3
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.3e-46 191.4 460 35.0
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.8e-46 190.3 439 34.4
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 1.1e-45 188.3 430 35.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.4e-45 188.0 440 34.1
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.8e-45 187.6 434 34.6
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 2.4e-45 187.2 418 34.0
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.1e-45 186.8 452 34.3
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.3e-45 186.0 416 33.2
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 9.1e-45 185.3 430 37.7
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 1.2e-44 184.9 485 34.2
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.2e-44 184.9 454 34.1
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 1.5e-44 184.5 416 32.9
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.5e-44 184.5 416 32.9
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 1.5e-44 184.5 440 34.3
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.5e-44 184.5 442 34.6
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.5e-44 183.0 453 34.2
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 4.5e-44 183.0 462 35.9
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.3e-43 181.4 441 34.7
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 2.2e-43 180.6 443 34.3
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.2e-43 180.6 374 36.6
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.8e-43 179.9 413 34.9
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 3.8e-43 179.9 417 36.9
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 3.8e-43 179.9 414 34.8
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 5.0e-43 179.5 389 37.3
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 5.0e-43 179.5 390 35.4
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.5e-43 178.7 431 32.9
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 8.5e-43 178.7 398 34.7
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.1e-42 178.3 435 34.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 1.1e-42 178.3 389 36.2
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 1.1e-42 178.3 444 33.8
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-42 177.9 434 34.3
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 3.2e-42 176.8 423 35.2
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 4.2e-42 176.4 397 35.3
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 5.5e-42 176.0 421 34.4
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 9.4e-42 175.3 413 35.4
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 9.4e-42 175.3 432 34.7
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.4e-40 171.4 412 35.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.4e-40 171.4 366 35.8
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.4e-40 171.4 437 34.8
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.8e-40 171.0 420 34.3
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.8e-40 171.0 416 36.5
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 6.7e-40 169.1 414 34.1
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 8.8e-40 168.7 427 35.4
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.5e-39 167.9 420 33.8
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 2.0e-39 167.5 428 33.2
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.6e-39 167.2 422 35.8
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 4.4e-39 166.4 479 32.2
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 4.4e-39 166.4 420 35.7
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 5.7e-39 166.0 375 36.5
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 3.7e-38 163.3 414 31.2
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 3.7e-38 163.3 460 34.1
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 6.3e-38 162.5 418 36.4
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.4e-37 161.4 362 34.3
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.4e-37 160.6 416 33.2
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.1e-37 160.2 350 34.9
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 4.1e-37 159.8 415 33.0
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.1e-37 159.8 460 32.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 7.0e-37 159.1 439 32.3
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 7.0e-37 159.1 425 32.2
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 7.0e-37 159.1 425 34.1
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.0e-36 157.5 418 35.4
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.6e-36 157.1 394 33.8
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 3.5e-36 156.8 435 33.6
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.5e-36 156.4 426 32.6
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.5e-36 156.4 352 35.2
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 7.7e-36 155.6 439 32.1
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 7.7e-36 155.6 429 34.0
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.0e-35 155.2 424 32.8
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.0e-35 155.2 412 33.0
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.7e-35 154.5 312 37.2
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 3.8e-35 153.3 416 35.1
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 5.0e-35 152.9 428 32.7
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 6.5e-35 152.5 385 31.9
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 8.5e-35 152.1 404 34.7
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.5e-34 150.6 413 33.7
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.2e-34 149.8 442 31.9
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 1.2e-33 148.3 440 30.0
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 2.1e-33 147.5 413 32.9
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.1e-33 146.0 294 37.4
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 8.0e-33 145.6 432 32.4
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.0e-32 145.2 386 33.4
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-32 145.2 424 30.9
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.0e-32 145.2 445 31.5
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.0e-32 143.7 441 32.9
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 3.0e-32 143.7 308 39.0
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 5.2e-32 142.9 423 30.3
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 2.0e-31 141.0 423 32.6
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.0e-31 141.0 423 32.6
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 4.4e-31 139.8 418 31.6
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 1.7e-30 137.9 420 31.7
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-30 137.9 351 32.5
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.1e-29 133.7 429 32.9
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 3.1e-29 133.7 439 28.9
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.2e-28 131.7 354 34.2
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 7.7e-28 129.0 208 38.9
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.9e-27 127.1 429 31.2
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.8e-27 126.7 292 36.3
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-26 124.8 365 33.4
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 4.7e-25 119.8 428 30.4
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 8.0e-25 119.0 272 37.1
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.7e-22 111.3 399 30.6
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 4.8e-22 109.8 403 31.5
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 4.1e-21 106.7 244 36.5
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.2e-20 105.1 425 27.8
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 7.7e-20 102.4 298 31.5
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 6.6e-19 99.4 279 33.0
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 2.1e-17 94.4 371 28.8
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 2.0e-15 87.8 192 35.4
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-14 84.3 303 28.7
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 4.9e-14 83.2 192 37.0
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 4.1e-13 80.1 160 38.1
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 7.0e-13 79.3 405 27.2
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.7e-12 77.4 118 39.8
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 2.9e-11 73.9 321 28.7
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 3.9e-11 73.6 186 31.2
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 6.1e-09 66.2 144 35.4
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.0e-08 65.5 201 29.9
CBR_g34048 Chara braunii HOM05D003379 ORTHO05D003862 3.4e-07 60.5 162 32.1
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 9.8e-07 58.9 77 45.5
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 2.9e-06 57.4 121 37.2
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 3.7e-06 57.0 77 44.2
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 4.9e-06 56.6 78 44.9


User provided reference genes

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