Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 0.0e+00 1939.1 979 100.0
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 2.6e-282 975.7 1135 48.5
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 3.4e-282 975.3 1129 48.2
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 8.4e-273 944.1 1128 47.8
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 4.3e-269 931.8 1130 46.9
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 1.3e-268 930.2 1131 46.7
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 1.3e-268 930.2 1126 47.2
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 5.1e-262 908.3 1115 46.7
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 2.4e-259 899.4 1132 46.1
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 2.2e-257 892.9 1125 45.0
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 3.2e-256 889.0 1122 44.7
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 7.4e-253 877.9 1127 45.1
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 1.7e-252 876.7 1134 44.7
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 2.8e-252 875.9 1130 44.9
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 7.7e-250 867.8 1125 44.3
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 7.7e-250 867.8 1124 44.5
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 3.8e-249 865.5 1128 45.7
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 1.1e-248 864.0 1135 44.4
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 7.2e-248 861.3 1130 44.9
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 2.7e-247 859.4 1146 44.6
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 2.7e-247 859.4 1144 44.6
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 1.1e-245 854.0 1122 43.9
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 9.7e-245 850.9 1163 44.0
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 2.8e-244 849.4 1121 43.9
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 8.2e-244 847.8 1175 43.1
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.1e-243 847.4 1129 44.2
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 7.0e-243 844.7 1127 43.6
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 7.7e-242 841.3 1129 44.6
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.3e-241 840.5 1129 43.8
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 2.2e-241 839.7 1128 44.0
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 2.2e-241 839.7 1126 44.0
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 8.5e-241 837.8 1130 44.0
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.5e-240 837.0 1130 44.0
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 4.2e-240 835.5 1147 43.9
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 2.7e-239 832.8 1077 45.4
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 3.6e-239 832.4 1139 43.9
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 8.0e-239 831.2 1137 43.4
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 1.0e-238 830.9 1135 44.1
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.0e-238 830.9 1130 43.6
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 7.5e-237 824.7 1134 43.7
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 7.5e-237 824.7 1154 43.8
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 1.3e-236 823.9 1130 43.6
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 6.3e-236 821.6 1124 43.1
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 2.4e-235 819.7 1142 43.8
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 3.5e-234 815.8 1092 44.6
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 3.5e-234 815.8 1133 43.5
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 1.0e-233 814.3 1128 43.2
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 8.5e-233 811.2 1102 44.2
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 1.9e-232 810.1 1139 42.8
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 4.2e-232 808.9 1134 42.6
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 7.2e-232 808.1 1137 42.6
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 9.4e-232 807.7 1137 42.3
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 6.1e-231 805.1 1140 43.3
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 3.4e-229 799.3 1133 42.2
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 1.4e-227 793.9 1150 42.0
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 4.5e-226 788.9 1125 42.7
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 1.7e-225 786.9 1151 42.1
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 9.5e-224 781.2 1124 43.1
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 1.2e-223 780.8 1142 42.0
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 3.6e-223 779.2 1149 41.9
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 4.7e-223 778.9 1130 42.1
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 4.7e-223 778.9 1132 41.6
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 1.2e-221 774.2 1141 42.1
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 3.2e-219 766.1 1131 41.7
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 4.1e-219 765.8 1150 42.0
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 2.7e-218 763.1 1125 41.2
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 4.6e-218 762.3 1134 39.6
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 1.1e-216 757.7 1135 39.4
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 9.5e-216 754.6 1130 42.1
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 2.1e-215 753.4 1139 39.3
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 2.8e-215 753.1 1135 39.5
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 6.8e-214 748.4 1022 43.6
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 8.9e-214 748.0 1135 39.7
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 7.5e-213 745.0 1141 39.4
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 1.7e-212 743.8 1129 42.1
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 8.3e-212 741.5 1133 39.5
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 1.1e-211 741.1 1133 39.5
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 1.4e-211 740.7 1136 39.2
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 4.1e-211 739.2 1134 39.0
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 5.4e-211 738.8 1136 39.0
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 3.9e-209 732.6 1134 40.6
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 1.1e-208 731.1 1129 39.6
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 7.1e-203 711.8 1141 39.4
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 6.0e-202 708.8 1143 39.1
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 1.3e-201 707.6 1005 41.6
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 5.1e-201 705.7 1141 38.7
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 5.2e-198 695.7 1146 38.2
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 7.3e-192 675.2 1144 38.6
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 7.6e-189 665.2 1110 38.0
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-181 640.6 1140 36.1
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 2.4e-174 617.1 1111 36.5
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 4.2e-171 606.3 1202 33.1
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.2e-170 604.7 1133 36.3
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 9.6e-160 568.5 1220 31.2
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 3.8e-156 556.6 1143 33.9
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 1.9e-155 554.3 904 39.7
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 6.3e-151 539.3 482 57.1
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 9.1e-142 508.8 494 54.7
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 4.8e-135 486.5 482 52.9
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 8.2e-135 485.7 776 39.0
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 1.2e-133 481.9 483 52.6
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 2.2e-132 477.6 552 48.0
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.5e-131 474.2 555 47.4
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 5.2e-129 466.5 505 50.9
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 4.4e-128 463.4 496 50.8
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 2.5e-123 447.6 500 49.8
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 5.5e-123 446.4 464 52.8
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 4.1e-118 430.3 494 47.6
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 2.1e-114 417.9 498 46.6
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 3.1e-110 404.1 464 49.1
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.9e-101 373.2 704 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.9e-94 351.7 476 39.5
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 2.2e-63 248.4 249 51.4
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-52 211.8 374 39.6
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 1.5e-51 209.1 648 26.1
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 3.2e-46 191.4 508 28.1
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 5.5e-46 190.7 241 43.6
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 6.9e-41 173.7 268 38.4
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 8.8e-36 156.8 143 52.4
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-35 156.0 250 35.6
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 9.7e-35 153.3 779 23.1
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-32 146.0 175 44.0
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 6.5e-31 140.6 254 36.2
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-29 136.3 204 42.2
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 5.1e-28 131.0 204 38.7
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-27 129.4 377 29.7
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 1.7e-26 125.9 125 46.4
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 2.2e-26 125.6 207 39.1
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-25 122.9 130 45.4
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 6.9e-25 120.6 712 24.9
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-19 102.4 259 29.7
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-19 102.1 121 43.0
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 4.1e-17 94.7 236 29.2
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-16 92.0 300 28.0
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-16 92.0 300 28.0
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-13 80.9 244 27.5
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-13 80.9 244 27.5
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 2.6e-11 75.5 53 66.0
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 2.8e-10 72.0 139 35.3
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-08 65.9 60 51.7
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.0e-08 65.9 81 38.3
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 6.5e-07 60.8 62 46.8
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 5.5e-06 57.8 80 37.5


User provided reference genes

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