Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 7.0e-89 330.5 154 100.0
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 5.5e-86 320.9 154 96.1
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 8.9e-52 207.2 153 58.8
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.9e-50 201.4 144 58.3
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.4e-49 199.9 146 58.9
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.9e-49 199.5 149 59.1
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.4e-49 199.1 143 58.7
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 4.1e-49 198.4 149 59.7
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 9.2e-49 197.2 144 56.9
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.2e-48 196.8 149 54.4
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.6e-48 196.4 136 62.5
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 2.0e-48 196.1 140 60.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.5e-48 195.3 143 57.3
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 3.5e-48 195.3 143 57.3
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.5e-48 195.3 142 59.2
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 4.6e-48 194.9 141 58.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 4.6e-48 194.9 142 58.5
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 7.8e-48 194.1 143 55.9
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.7e-47 193.0 143 58.0
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.6e-47 191.0 144 55.6
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 6.6e-47 191.0 149 56.4
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 6.6e-47 191.0 139 59.0
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 8.6e-47 190.7 150 56.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.1e-46 190.3 142 57.0
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.9e-46 189.5 144 54.9
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.3e-46 188.7 147 56.5
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 5.6e-46 188.0 149 55.0
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.1e-45 186.0 145 57.9
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.8e-45 185.7 149 55.0
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 2.8e-45 185.7 138 58.7
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 2.8e-45 185.7 139 58.3
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 4.7e-45 184.9 148 54.7
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 8.1e-45 184.1 148 55.4
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 8.1e-45 184.1 146 54.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 8.1e-45 184.1 147 54.4
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.1e-44 183.7 137 58.4
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.8e-44 183.0 139 57.6
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 3.1e-44 182.2 142 54.2
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 5.2e-44 181.4 142 53.5
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 1.5e-43 179.9 148 52.7
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 2.6e-43 179.1 151 55.0
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.3e-42 176.8 137 56.2
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.2e-42 176.0 140 55.0
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.2e-42 176.0 150 52.7
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 2.9e-42 175.6 143 53.8
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.7e-42 175.3 141 55.3
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 6.4e-42 174.5 156 54.5
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.1e-41 173.7 140 52.1
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.4e-41 173.3 151 51.7
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 3.2e-41 172.2 133 55.6
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 4.1e-41 171.8 141 51.8
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 5.4e-41 171.4 140 52.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 9.2e-41 170.6 139 52.5
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.2e-40 170.2 149 51.0
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.6e-40 169.9 135 54.1
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.6e-40 169.9 135 54.1
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.7e-40 169.1 140 52.1
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.7e-40 169.1 136 53.7
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 3.5e-40 168.7 135 54.8
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.5e-40 168.7 140 50.0
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 4.6e-40 168.3 132 56.1
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 4.6e-40 168.3 146 56.2
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.0e-39 167.2 132 57.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.3e-39 166.8 139 51.8
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.3e-39 166.8 139 51.8
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.3e-39 166.8 136 54.4
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 1.7e-39 166.4 138 52.9
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.3e-39 166.0 139 51.8
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.3e-39 166.0 151 49.7
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 5.1e-39 164.9 146 47.9
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 6.6e-39 164.5 130 56.2
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 8.6e-39 164.1 133 53.4
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 8.6e-39 164.1 130 56.2
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.1e-38 163.7 135 52.6
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.5e-38 163.3 131 55.0
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.5e-38 163.3 148 52.0
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.9e-38 162.9 131 55.0
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 1.9e-38 162.9 142 50.0
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.3e-38 161.8 131 54.2
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 5.6e-38 161.4 157 46.5
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 9.5e-38 160.6 130 53.8
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 9.5e-38 160.6 140 52.1
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-37 160.2 129 55.0
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-37 160.2 129 55.0
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.2e-37 160.2 129 55.0
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.2e-37 160.2 149 49.7
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.6e-37 159.8 122 58.2
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 4.7e-37 158.3 149 49.0
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 6.2e-37 157.9 149 49.7
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 8.1e-37 157.5 130 53.8
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 8.1e-37 157.5 130 53.8
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 8.1e-37 157.5 130 53.8
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 8.1e-37 157.5 142 50.7
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 8.1e-37 157.5 142 50.0
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.4e-36 156.8 129 56.6
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.8e-36 156.4 129 56.6
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 2.3e-36 156.0 149 47.0
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 5.2e-36 154.8 149 47.0
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.8e-36 154.5 129 55.8
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.9e-36 154.1 129 55.8
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 1.2e-35 153.7 149 48.3
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 1.5e-35 153.3 138 47.1
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.7e-34 148.7 214 37.4
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 8.4e-34 147.5 121 53.7
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.4e-33 146.7 132 47.7
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 3.2e-33 145.6 143 48.3
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.2e-32 143.7 132 49.2
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-32 142.9 132 52.3
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.7e-32 142.5 131 47.3
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 4.6e-32 141.7 130 46.9
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 7.8e-32 141.0 133 48.1
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.7e-31 139.8 133 47.4
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 5.1e-31 138.3 131 46.6
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.5e-30 136.7 134 47.0
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.5e-30 136.7 127 48.0
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.9e-30 136.3 125 48.8
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 7.3e-30 134.4 129 50.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 9.6e-30 134.0 118 53.4
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 6.2e-29 131.3 119 51.3
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.8e-28 129.8 121 47.9
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-28 129.4 119 50.4
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-27 125.2 96 58.3
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 5.8e-27 124.8 80 68.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 7.6e-27 124.4 151 44.4
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.9e-26 122.5 138 42.8
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 8.4e-26 120.9 211 32.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-24 117.1 112 47.3
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-24 117.1 96 55.2
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 1.6e-21 106.7 83 61.4
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 5.3e-20 101.7 83 54.2
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 9.0e-20 100.9 134 38.8
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.2e-19 100.5 134 39.6
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.8e-19 98.2 134 37.3
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.4e-17 93.6 162 32.1
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 2.7e-16 89.4 91 44.0
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.3e-15 86.3 84 42.9
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 3.9e-15 85.5 142 33.8
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 2.5e-14 82.8 140 31.4
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 4.3e-14 82.0 72 50.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 8.1e-13 77.8 87 44.8
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 3.4e-11 72.4 117 33.3
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 2.1e-08 63.2 63 41.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 6.0e-08 61.6 57 45.6
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.3e-07 59.7 57 43.9


User provided reference genes

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