Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.9e-165 585.1 284 100.0
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.5e-132 475.7 253 91.7
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.5e-81 307.0 221 64.7
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 7.1e-79 298.1 253 56.9
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.2e-79 297.7 231 61.0
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.2e-78 297.4 253 56.9
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.6e-78 297.0 231 60.2
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.7e-78 296.2 230 60.4
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.6e-78 295.4 207 66.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.0e-77 294.3 230 60.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.0e-77 294.3 253 56.5
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.3e-77 293.9 224 60.7
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 3.0e-77 292.7 253 55.7
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 5.1e-77 292.0 221 60.2
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.5e-76 290.4 209 66.0
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.5e-76 289.7 227 60.4
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 5.6e-76 288.5 212 63.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 5.6e-76 288.5 227 61.2
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 9.5e-76 287.7 225 62.2
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-75 287.3 209 63.6
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.2e-75 287.3 231 60.2
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.6e-75 287.0 224 63.4
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.1e-75 286.6 209 64.1
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.7e-75 285.4 209 63.2
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.4e-74 283.9 228 61.4
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.0e-74 282.3 215 60.0
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 4.0e-74 282.3 210 61.0
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 8.9e-74 281.2 232 59.1
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.5e-73 280.4 229 61.6
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.0e-73 280.0 215 60.0
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.6e-73 279.6 230 61.7
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.6e-73 279.6 262 54.6
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.4e-73 279.3 205 62.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.4e-73 279.3 256 55.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 3.4e-73 279.3 212 61.8
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.4e-73 279.3 210 64.8
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.4e-73 278.9 212 60.4
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 9.9e-73 277.7 208 63.5
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.3e-72 277.3 224 58.0
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.2e-72 276.6 221 62.0
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 4.9e-72 275.4 230 60.0
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.4e-71 273.9 230 59.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.4e-71 273.9 230 56.1
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.9e-71 273.5 230 58.7
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.9e-71 273.5 230 58.7
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.9e-71 273.5 230 58.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.9e-71 273.5 233 57.1
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.2e-71 272.7 255 54.5
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.2e-71 272.7 207 60.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.1e-71 272.3 228 58.3
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.1e-71 272.3 228 58.3
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 5.4e-71 271.9 249 55.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 5.4e-71 271.9 222 56.8
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 5.4e-71 271.9 243 53.5
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.4e-71 271.9 243 53.5
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 5.4e-71 271.9 207 61.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.1e-71 271.6 204 60.3
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 7.1e-71 271.6 252 54.8
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 9.2e-71 271.2 228 57.0
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-70 270.8 218 58.3
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.6e-70 270.4 206 62.1
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.7e-70 269.6 233 59.7
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 4.6e-70 268.9 230 57.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 6.0e-70 268.5 230 57.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 7.8e-70 268.1 253 53.0
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.8e-70 268.1 202 62.9
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.0e-69 267.7 210 61.9
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-69 267.3 231 59.3
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.7e-69 266.9 251 55.4
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.7e-69 266.9 203 59.1
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.3e-69 266.5 239 59.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 3.0e-69 266.2 231 59.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.1e-68 264.2 226 56.6
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.5e-68 263.8 208 59.6
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.5e-68 263.1 225 55.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.8e-67 259.6 264 51.9
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.1e-67 258.1 207 60.4
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.8e-66 256.9 210 58.1
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.8e-66 256.9 207 60.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 4.0e-66 255.8 224 54.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 4.0e-66 255.8 251 50.6
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 8.9e-66 254.6 184 63.0
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.0e-65 253.4 240 52.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 7.6e-65 251.5 205 57.6
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.3e-64 250.8 223 56.5
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.3e-64 250.8 225 54.7
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.7e-64 250.4 212 57.5
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 2.2e-64 250.0 252 51.2
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.9e-64 249.6 212 54.2
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.9e-64 248.8 255 51.4
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 6.4e-64 248.4 209 56.9
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.4e-63 246.5 210 55.7
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.2e-63 246.1 253 51.8
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 5.4e-63 245.4 253 51.8
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-62 244.2 228 54.8
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 3.5e-62 242.7 209 56.5
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 3.5e-62 242.7 167 64.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 7.8e-62 241.5 213 55.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.3e-61 240.7 197 58.9
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 3.0e-61 239.6 185 60.0
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 6.6e-61 238.4 205 55.1
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 8.7e-61 238.0 261 49.8
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.3e-60 236.1 231 51.1
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 4.3e-60 235.7 205 54.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.6e-60 235.3 175 62.9
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 7.3e-60 235.0 162 63.6
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.6e-59 233.8 215 53.5
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.6e-59 233.8 208 55.3
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.6e-59 233.8 224 50.0
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.1e-59 233.4 220 54.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 2.8e-59 233.0 254 48.8
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.4e-58 229.9 242 49.6
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 3.1e-58 229.6 170 61.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 3.1e-58 229.6 228 52.6
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 4.0e-58 229.2 229 49.3
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.0e-57 226.9 259 45.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 5.8e-57 225.3 215 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 9.9e-57 224.6 196 54.1
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.7e-56 223.8 228 51.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.2e-55 219.5 204 50.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.2e-54 217.6 203 52.7
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 7.9e-54 214.9 215 49.3
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.5e-52 210.7 262 45.4
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 3.3e-52 209.5 219 47.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 5.3e-50 202.2 207 49.3
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 6.9e-50 201.8 203 47.8
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 7.6e-49 198.4 168 53.0
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.4e-47 194.1 182 53.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 6.2e-43 178.7 185 45.4
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.6e-41 173.3 190 42.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 6.5e-40 168.7 212 45.3
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 4.2e-39 166.0 256 38.3
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.8e-35 152.5 97 62.9
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 6.3e-35 152.1 112 63.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.3e-32 144.4 96 59.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-32 144.1 96 59.4
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.2e-31 139.8 151 44.4
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 7.4e-28 128.6 108 56.5
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.3e-27 127.9 115 57.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.2e-22 111.3 190 35.3
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 3.9e-21 106.3 168 32.7
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 1.3e-19 101.3 69 62.3
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 8.2e-19 98.6 269 29.7
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.2e-19 98.6 64 59.4
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 9.1e-18 95.1 251 26.3
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.2e-17 94.7 64 65.6
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.8e-13 80.9 84 47.6
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 4.4e-12 76.3 99 40.4
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 9.7e-12 75.1 162 32.1
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 1.8e-10 70.9 42 66.7


User provided reference genes

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