Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 8.9e-84 313.5 155 100.0
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 4.3e-46 188.3 145 57.2
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 2.8e-45 185.7 145 56.6
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 4.8e-45 184.9 145 57.2
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 6.2e-45 184.5 145 56.6
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 3.1e-44 182.2 145 55.9
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 3.1e-44 182.2 145 56.6
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 3.1e-44 182.2 145 56.6
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.5e-43 179.9 145 53.8
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 2.0e-43 179.5 145 55.9
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 2.6e-43 179.1 145 54.5
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.3e-42 176.8 145 54.5
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 2.2e-42 176.0 145 55.2
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.9e-42 175.6 145 63.4
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 2.9e-42 175.6 145 55.2
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 6.4e-42 174.5 145 53.8
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 8.4e-42 174.1 145 54.5
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.1e-41 173.7 145 52.4
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.1e-41 173.7 146 53.4
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.4e-41 173.3 145 53.8
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.9e-41 172.9 145 55.2
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 2.4e-41 172.6 145 56.6
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 4.2e-41 171.8 145 54.5
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.2e-41 171.8 145 54.5
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 4.2e-41 171.8 145 54.5
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 4.2e-41 171.8 144 59.0
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.6e-40 169.9 145 53.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.6e-40 169.9 145 55.2
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.7e-40 169.1 147 52.4
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 2.7e-40 169.1 147 52.4
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 3.5e-40 168.7 145 50.3
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 4.6e-40 168.3 145 49.0
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 4.6e-40 168.3 145 51.0
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 6.0e-40 167.9 145 49.7
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 6.0e-40 167.9 145 51.7
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.0e-39 167.2 145 49.7
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.7e-39 166.4 145 51.7
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 2.3e-39 166.0 145 52.4
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 2.3e-39 166.0 145 51.7
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 5.1e-39 164.9 145 51.0
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 8.7e-39 164.1 145 50.3
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 8.7e-39 164.1 147 51.0
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 8.7e-39 164.1 145 51.7
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.1e-38 163.7 145 49.7
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.5e-38 163.3 145 49.0
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.5e-38 163.3 145 51.7
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.5e-38 163.3 145 51.7
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 1.5e-38 163.3 145 51.7
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 1.9e-38 162.9 145 53.1
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.9e-38 162.9 145 49.7
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 3.3e-38 162.2 156 46.2
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 5.6e-38 161.4 147 50.3
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 5.6e-38 161.4 146 52.1
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 5.6e-38 161.4 146 52.1
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 7.3e-38 161.0 145 49.7
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 7.3e-38 161.0 145 50.3
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 9.6e-38 160.6 145 51.0
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.3e-37 160.2 145 50.3
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.3e-37 160.2 144 50.7
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 3.6e-37 158.7 145 49.7
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 3.6e-37 158.7 145 49.7
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 4.8e-37 158.3 145 49.7
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 4.8e-37 158.3 145 49.7
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 4.8e-37 158.3 145 49.7
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 4.8e-37 158.3 145 49.7
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 4.8e-37 158.3 145 49.7
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 8.1e-37 157.5 145 49.7
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.8e-36 156.4 145 50.3
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.8e-36 156.4 145 50.3
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.4e-36 156.0 145 49.0
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.4e-36 156.0 145 49.0
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 2.4e-36 156.0 145 49.0
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 3.1e-36 155.6 145 48.3
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 3.1e-36 155.6 145 48.3
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 4.0e-36 155.2 145 50.3
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 5.3e-36 154.8 153 47.7
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 5.3e-36 154.8 145 48.3
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.9e-36 154.5 145 47.6
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 9.0e-36 154.1 147 47.6
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 9.0e-36 154.1 145 49.0
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 1.5e-35 153.3 142 47.2
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.0e-35 152.9 145 48.3
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 2.6e-35 152.5 146 47.9
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.4e-35 152.1 145 47.6
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 7.6e-35 151.0 161 44.1
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 9.9e-35 150.6 146 48.6
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.3e-34 150.2 145 47.6
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.3e-34 150.2 145 47.6
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.2e-34 149.4 145 46.9
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 2.2e-34 149.4 145 47.6
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.9e-34 149.1 155 43.2
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.8e-34 148.7 145 47.6
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 4.9e-34 148.3 145 48.3
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.9e-33 146.4 145 46.2
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 5.4e-33 144.8 157 43.3
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 5.4e-33 144.8 145 48.3
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 7.1e-33 144.4 142 45.8
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.7e-32 142.5 125 51.2
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 3.5e-32 142.1 145 43.4
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 6.0e-32 141.4 145 44.8
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 6.0e-32 141.4 171 40.4
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 7.9e-32 141.0 197 38.6
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 1.8e-31 139.8 168 39.3
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.8e-31 139.8 182 37.9
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.8e-31 139.8 145 49.0
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 3.0e-31 139.0 106 54.7
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 3.9e-31 138.7 160 38.8
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 5.1e-31 138.3 150 46.0
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 5.1e-31 138.3 160 41.9
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 5.1e-31 138.3 143 46.2
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 5.1e-31 138.3 143 46.2
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.5e-30 136.7 149 44.3
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.5e-30 136.7 145 44.8
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 2.5e-30 136.0 170 42.9
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 9.6e-30 134.0 145 41.4
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 2.1e-29 132.9 145 40.7
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.8e-29 132.5 145 41.4
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.8e-28 129.8 162 39.5
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.0e-26 124.0 143 40.6
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 4.9e-26 121.7 146 39.0
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.9e-25 119.8 92 55.4
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 2.7e-24 115.9 145 42.1
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 4.6e-24 115.2 146 36.3
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.0e-23 114.0 145 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.3e-23 113.6 146 35.6
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 5.1e-23 111.7 148 41.9
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 2.5e-22 109.4 76 63.2
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 1.3e-21 107.1 81 53.1
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.3e-21 107.1 158 36.7
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 2.8e-21 105.9 81 50.6
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.1e-20 104.0 112 42.9
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 2.4e-20 102.8 163 36.8
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.5e-19 100.1 102 45.1
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.2e-16 90.5 138 34.8
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.2e-16 90.5 138 34.8
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 1.0e-15 87.4 146 32.9
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.1e-14 84.0 142 34.5
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.3e-13 80.5 145 31.0
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 2.4e-12 76.3 145 32.4
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 6.9e-12 74.7 146 30.1
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 3.4e-11 72.4 92 41.3
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 1.4e-09 67.0 70 38.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.2e-09 65.9 148 29.7
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.0e-07 60.8 70 34.3


User provided reference genes

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