Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 0.0e+00 1399.4 718 100.0
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.1e-218 763.8 781 55.6
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.2e-214 749.6 784 54.1
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.4e-211 740.3 713 56.2
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.8e-211 740.0 711 57.1
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.4e-210 735.3 785 52.7
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.1e-208 730.7 749 53.9
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.6e-207 726.9 740 55.3
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 6.5e-206 721.5 759 54.4
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.9e-205 719.9 722 54.8
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.3e-203 713.0 755 53.5
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 2.3e-203 713.0 760 52.2
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 4.0e-203 712.2 750 55.3
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.5e-202 710.3 755 54.6
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.6e-202 709.5 759 53.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 4.4e-202 708.8 735 54.4
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.7e-201 706.8 749 53.8
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.7e-201 706.8 752 53.3
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.2e-201 706.4 731 54.2
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 3.7e-201 705.7 728 55.4
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 2.4e-200 703.0 760 52.1
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 3.1e-200 702.6 759 53.5
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 4.1e-200 702.2 720 52.5
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 4.1e-200 702.2 758 52.2
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 7.0e-200 701.4 751 51.3
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 3.5e-199 699.1 746 53.8
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.3e-198 697.2 730 52.6
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 1.3e-198 697.2 730 52.5
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 2.9e-198 696.0 736 51.0
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 3.8e-198 695.7 745 50.3
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 5.0e-198 695.3 793 51.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 6.5e-198 694.9 738 52.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.1e-197 694.1 743 53.0
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.9e-197 693.3 726 51.5
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 5.5e-197 691.8 730 52.6
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 9.5e-197 691.0 703 54.8
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 1.2e-196 690.6 733 52.4
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 2.8e-196 689.5 723 52.3
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 6.8e-195 684.9 779 49.7
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 6.8e-195 684.9 731 54.3
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.6e-194 682.9 724 51.4
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 3.4e-194 682.6 717 51.6
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 5.7e-194 681.8 759 52.0
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 7.5e-194 681.4 734 51.4
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.7e-193 680.2 794 50.8
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.9e-193 678.7 765 51.8
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 5.4e-192 675.2 726 51.1
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 7.0e-192 674.9 741 50.9
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 7.0e-192 674.9 717 51.0
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 3.5e-191 672.5 749 51.8
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 7.8e-191 671.4 771 49.5
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.7e-190 670.2 737 49.8
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.7e-190 670.2 763 49.3
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 2.3e-190 669.8 749 49.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.9e-190 669.5 713 51.8
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 8.6e-190 667.9 726 50.3
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.1e-189 667.5 740 49.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.5e-189 666.4 739 51.0
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.8e-188 662.9 762 49.2
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 3.6e-188 662.5 730 50.5
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 4.7e-188 662.1 753 49.4
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 6.8e-187 658.3 771 50.5
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.2e-186 657.5 710 50.3
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 2.4e-184 649.8 770 48.7
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 3.2e-184 649.4 733 49.7
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 2.0e-183 646.7 749 49.9
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.7e-182 643.7 764 48.4
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 2.3e-182 643.3 773 47.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 2.3e-182 643.3 725 48.0
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 6.6e-182 641.7 767 49.4
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 8.6e-182 641.3 773 47.9
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.4e-179 634.0 688 51.6
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 7.5e-178 628.2 728 50.1
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.3e-177 627.5 673 51.6
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 3.7e-177 625.9 708 49.3
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.4e-176 624.0 713 48.0
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 3.5e-175 619.4 704 48.9
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.0e-175 618.6 806 47.0
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 7.3e-173 611.7 700 48.7
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.6e-172 610.5 700 47.3
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.6e-172 610.5 714 47.3
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 6.2e-172 608.6 715 47.8
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.2e-170 604.4 702 47.4
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.6e-164 583.9 713 48.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.1e-164 583.6 713 48.2
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 3.6e-164 582.8 714 46.4
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.5e-162 577.4 743 45.8
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 3.0e-158 563.1 839 40.2
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 5.6e-157 558.9 714 45.8
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.1e-155 554.7 742 42.0
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 5.2e-155 552.4 922 41.1
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.9e-149 533.9 738 44.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.1e-144 518.1 703 41.5
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.8e-142 510.8 631 49.1
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 3.3e-141 506.5 394 65.7
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.2e-138 498.0 610 47.9
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 2.6e-138 496.9 714 42.6
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 2.6e-138 496.9 714 42.6
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.6e-138 496.9 714 42.6
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 3.5e-135 486.5 593 45.7
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 6.7e-134 482.3 568 48.9
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.4e-131 473.8 681 43.0
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.5e-130 471.1 391 62.7
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 3.0e-126 456.8 683 41.3
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 6.5e-121 439.1 530 48.7
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.5e-117 427.9 389 55.5
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.0e-113 412.9 574 44.3
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 3.4e-106 390.2 506 46.4
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 2.1e-103 380.9 579 40.8
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.5e-101 374.8 503 46.9
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.2e-96 357.1 505 43.4
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 2.7e-95 354.0 257 67.3
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 2.6e-69 267.7 496 37.7
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 2.9e-60 237.7 191 60.7
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.0e-57 227.6 352 41.8
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.1e-54 219.2 217 56.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 4.4e-53 213.8 165 61.2
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 9.2e-43 179.5 156 59.0
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.6e-39 167.5 118 69.5
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.4e-35 155.6 143 54.5
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.9e-35 155.2 143 53.8
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 2.5e-32 144.8 140 52.1
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 9.6e-32 142.9 128 55.5
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 2.8e-31 141.4 99 67.7
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.0e-30 137.5 114 61.4
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 7.1e-27 126.7 159 38.4
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 8.7e-25 119.8 86 67.4
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.4e-22 112.5 74 75.7
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 9.9e-21 106.3 174 36.2
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.4e-19 102.4 604 22.7
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.7e-18 98.2 93 48.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 4.6e-18 97.4 479 22.8
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 7.9e-18 96.7 149 32.9
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.3e-17 95.1 83 50.6
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.1e-14 86.3 101 45.5
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.4e-14 85.1 328 26.8
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 3.1e-14 84.7 90 48.9
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.1e-10 72.0 47 76.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-06 59.7 58 50.0


User provided reference genes

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