Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 7.2e-172 607.1 288 100.0
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.6e-131 473.0 281 77.6
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.3e-130 469.2 282 74.8
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 5.8e-129 464.5 282 74.1
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 5.8e-129 464.5 279 75.3
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 9.8e-129 463.8 279 75.3
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 6.4e-128 461.1 281 75.4
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.4e-127 459.9 282 75.2
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.4e-127 459.1 280 75.0
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 3.2e-127 458.8 279 74.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 3.2e-127 458.8 280 73.6
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 5.4e-127 458.0 281 76.2
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 5.4e-127 458.0 276 75.0
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 7.1e-127 457.6 280 75.4
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 9.2e-127 457.2 280 75.4
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 9.2e-127 457.2 281 76.9
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.2e-126 456.8 281 75.1
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 1.6e-126 456.4 279 74.2
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.6e-126 456.4 280 76.1
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 2.7e-126 455.7 280 75.7
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 2.7e-126 455.7 281 75.1
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 2.7e-126 455.7 281 76.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 4.6e-126 454.9 281 73.0
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 4.6e-126 454.9 269 78.8
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 6.0e-126 454.5 282 73.0
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 7.8e-126 454.1 282 73.8
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.0e-125 453.8 281 74.4
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.3e-125 453.4 284 73.9
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.3e-125 453.4 281 75.4
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.3e-125 453.4 279 73.1
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.7e-125 453.0 283 72.4
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.7e-125 453.0 281 75.1
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 1.7e-125 453.0 281 74.4
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.7e-125 453.0 282 74.1
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.3e-125 452.6 281 75.1
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 8.6e-125 450.7 282 72.3
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 3.3e-124 448.7 282 74.1
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 3.3e-124 448.7 282 73.4
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 3.3e-124 448.7 282 72.0
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.6e-123 446.4 281 73.0
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 2.1e-123 446.0 282 72.7
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.1e-123 446.0 281 73.0
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 2.1e-123 446.0 281 73.3
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 3.6e-123 445.3 281 73.0
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.6e-123 445.3 281 74.0
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.7e-123 444.9 282 70.9
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 4.7e-123 444.9 287 73.2
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 6.2e-123 444.5 280 74.3
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 6.2e-123 444.5 282 71.3
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.2e-123 444.5 282 71.3
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.2e-123 444.5 281 71.5
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 1.8e-122 443.0 280 72.1
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.3e-122 442.6 281 71.9
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 3.1e-122 442.2 280 70.7
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 4.0e-122 441.8 280 70.7
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 4.0e-122 441.8 280 70.7
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 4.0e-122 441.8 280 70.7
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 4.0e-122 441.8 280 70.7
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 4.0e-122 441.8 280 70.7
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 6.8e-122 441.0 281 70.5
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.5e-121 439.9 281 74.0
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.5e-121 439.9 281 71.5
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.5e-121 439.9 281 73.3
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.0e-121 439.5 280 73.6
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.6e-121 439.1 282 70.2
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.6e-121 439.1 281 69.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 4.4e-121 438.3 281 71.5
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 4.4e-121 438.3 276 74.3
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 4.4e-121 438.3 281 69.4
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 5.8e-121 438.0 281 73.0
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 7.6e-121 437.6 311 67.5
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 7.6e-121 437.6 280 70.0
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 9.9e-121 437.2 286 72.7
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 9.9e-121 437.2 279 73.1
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 4.9e-120 434.9 281 70.1
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 6.4e-120 434.5 281 71.9
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 3.2e-119 432.2 280 68.9
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 6.0e-118 427.9 248 77.0
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 7.8e-118 427.6 290 67.6
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 7.8e-118 427.6 282 70.6
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.7e-117 426.4 312 64.7
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.9e-116 422.9 281 68.7
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.2e-115 420.2 270 71.9
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.8e-115 419.1 269 72.1
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 8.1e-115 417.5 281 68.7
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.6e-113 412.5 281 69.8
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 5.8e-113 411.4 269 70.3
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.6e-113 411.0 263 74.1
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 9.9e-113 410.6 281 68.3
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 9.9e-113 410.6 281 68.3
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.1e-111 407.1 296 65.2
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.4e-111 406.0 280 66.8
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 4.2e-111 405.2 265 70.2
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 7.1e-111 404.4 270 70.0
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.2e-110 403.7 247 73.7
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.2e-110 403.7 282 66.7
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.2e-110 403.7 280 66.1
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.3e-107 393.7 281 68.0
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 8.1e-107 391.0 264 68.2
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 6.9e-106 387.9 263 66.9
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.1e-103 380.6 236 74.6
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 4.3e-100 368.6 258 64.7
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.3e-99 367.1 251 65.3
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.1e-95 354.0 190 85.8
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 1.8e-93 346.7 281 58.7
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 7.4e-92 341.3 273 56.4
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 3.1e-90 335.9 266 60.2
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.2e-89 334.0 248 61.7
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.4e-89 332.4 422 44.3
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 5.7e-84 315.1 281 54.4
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.4e-82 310.5 418 43.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 3.4e-81 305.8 267 56.9
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.9e-76 290.0 167 76.0
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 5.7e-76 288.5 167 76.0
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.6e-75 287.0 278 50.0
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.2e-75 286.6 176 72.2
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 2.9e-72 276.2 176 68.8
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.8e-69 266.9 144 79.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 2.2e-67 260.0 306 44.1
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 2.9e-64 249.6 295 46.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.2e-62 244.2 144 75.7
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 6.3e-59 231.9 290 42.1
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 6.1e-54 215.3 142 72.5
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.0e-53 214.5 144 65.3
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.2e-53 212.2 135 74.1
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.5e-52 210.7 249 45.4
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.5e-44 184.1 248 42.3
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 2.2e-43 180.3 156 57.1
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 8.3e-43 178.3 223 39.0
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 8.0e-30 135.2 110 54.5
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 3.0e-29 133.3 77 74.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 2.2e-27 127.1 71 78.9
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 2.7e-25 120.2 72 68.1
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 2.7e-25 120.2 72 68.1
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 4.3e-23 112.8 92 58.7
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.6e-22 109.8 80 68.8
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 8.0e-22 108.6 80 62.5
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.0e-21 108.2 75 66.7
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.4e-21 107.8 76 65.8
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 4.4e-20 102.8 85 62.4
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.0e-13 79.7 47 72.3
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 8.3e-11 72.0 53 67.9
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 2.8e-06 57.0 117 29.1
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.8e-06 57.0 83 42.2


User provided reference genes

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