Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 0.0e+00 1148.3 601 100.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 9.1e-294 1013.1 654 84.6
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 6.9e-201 704.5 644 58.5
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 7.7e-192 674.5 655 56.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.0e-187 659.8 651 54.2
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.4e-187 658.7 612 59.2
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.1e-185 652.5 661 53.9
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.9e-182 643.3 655 53.6
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.2e-178 629.8 664 51.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.2e-178 629.8 661 52.2
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.4e-177 627.1 651 52.4
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.3e-175 620.5 646 52.6
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.2e-173 614.0 671 49.8
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 6.1e-173 611.7 653 51.5
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 6.7e-172 608.2 656 50.8
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 5.7e-171 605.1 647 51.3
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 4.8e-170 602.1 652 50.5
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 4.8e-170 602.1 648 52.8
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 8.2e-170 601.3 647 51.0
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 7.0e-169 598.2 657 50.8
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 2.7e-168 596.3 660 50.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.7e-168 596.3 662 49.7
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 5.9e-168 595.1 656 51.1
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.7e-167 593.6 651 50.8
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-167 593.2 648 50.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 2.2e-167 593.2 654 49.7
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.2e-167 593.2 653 50.8
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.9e-167 592.8 652 50.6
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.9e-167 592.8 648 51.5
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 3.8e-167 592.4 648 50.3
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 5.0e-167 592.0 697 48.5
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 6.5e-167 591.7 660 50.2
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 8.5e-167 591.3 688 48.7
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.5e-166 590.5 652 50.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.5e-166 590.5 668 47.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.9e-166 590.1 648 51.1
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.2e-166 589.3 651 50.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 3.2e-166 589.3 662 50.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.2e-166 589.0 651 50.7
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.2e-165 587.4 651 50.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.6e-165 585.9 646 50.6
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 4.7e-165 585.5 641 50.7
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 6.1e-165 585.1 654 49.7
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 6.1e-165 585.1 648 50.2
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 6.1e-165 585.1 652 50.2
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 6.1e-165 585.1 668 49.7
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 2.3e-164 583.2 645 50.5
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 4.0e-164 582.4 654 49.5
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-163 580.5 631 51.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.4e-163 578.9 659 49.2
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.3e-162 577.4 668 48.8
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.7e-162 577.0 659 49.0
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.7e-162 577.0 653 48.7
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 8.3e-162 574.7 659 46.9
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.1e-161 574.3 648 49.1
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.8e-161 573.5 663 49.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.2e-160 570.9 639 50.1
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.6e-160 570.5 643 49.3
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.0e-160 570.1 641 50.1
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.5e-160 568.9 653 47.9
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.9e-160 568.5 667 47.4
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.7e-159 567.0 649 48.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.3e-159 566.6 668 47.2
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-158 564.3 631 50.4
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.1e-158 564.3 676 47.0
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.9e-158 563.5 656 48.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 5.5e-158 562.0 669 46.9
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.8e-157 559.7 537 55.9
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.4e-156 557.4 665 47.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.4e-156 557.4 644 46.9
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 5.2e-156 555.4 660 46.5
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 5.2e-156 555.4 660 46.5
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 1.2e-155 554.3 641 47.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.5e-155 553.9 657 46.9
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.6e-155 553.1 643 47.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.6e-155 553.1 707 45.1
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.4e-155 552.7 651 47.8
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 7.5e-155 551.6 645 47.0
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.2e-154 550.1 636 50.9
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.4e-153 547.4 644 46.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.4e-153 547.4 661 47.5
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-153 547.0 652 46.3
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 3.1e-153 546.2 633 47.1
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.1e-153 546.2 649 47.0
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 3.1e-153 546.2 620 50.2
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.1e-153 545.8 590 50.7
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 9.2e-153 544.7 654 47.9
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.5e-152 542.7 660 47.4
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.0e-151 541.2 645 46.4
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 2.3e-151 540.0 648 45.7
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 5.0e-151 538.9 645 46.5
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.6e-151 538.5 679 47.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 6.6e-151 538.5 682 46.2
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.0e-148 531.2 646 46.4
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 6.8e-148 528.5 648 46.0
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 4.9e-146 522.3 650 44.8
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 5.4e-145 518.8 653 45.9
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 2.7e-144 516.5 651 45.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.3e-143 514.2 549 51.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 5.0e-143 512.3 659 43.6
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 6.6e-143 511.9 673 44.9
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 9.8e-139 498.0 622 44.9
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.9e-138 496.5 539 50.5
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.9e-134 483.8 644 43.6
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-133 481.1 581 48.4
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.8e-132 477.2 593 47.6
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 3.1e-132 476.5 651 41.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.9e-131 471.5 399 61.4
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.4e-129 467.6 644 42.9
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 1.6e-128 464.2 512 49.2
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 7.3e-126 455.3 556 46.8
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 4.4e-123 446.0 662 42.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 9.9e-123 444.9 651 39.8
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.2e-122 443.7 535 46.2
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 2.9e-122 443.4 515 45.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 5.6e-118 429.1 579 43.4
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.7e-114 417.5 644 40.2
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 9.0e-108 395.2 433 49.7
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 6.7e-95 352.4 377 49.9
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.3e-87 328.2 404 48.3
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.2e-73 280.4 540 34.8
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.2e-66 257.7 247 53.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.3e-61 241.9 252 53.2
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.2e-59 235.3 431 36.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.4e-54 216.9 235 50.2
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.4e-47 195.3 540 30.0
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.5e-46 191.8 373 36.5
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 6.3e-45 186.4 398 33.2
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 7.7e-43 179.5 252 41.3
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.1e-40 171.4 188 52.1
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 7.5e-38 162.9 304 37.2
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.2e-37 161.4 171 47.4
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.8e-36 158.3 278 38.1
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.0e-35 154.8 136 56.6
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.6e-32 145.2 183 48.1
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.1e-32 143.3 134 57.5
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 8.9e-31 139.4 179 44.7
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 3.7e-29 134.0 252 35.7
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.2e-28 129.4 117 57.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.0e-27 128.3 200 41.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-22 111.3 109 50.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 3.4e-22 110.9 604 22.8
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 7.8e-19 99.8 110 48.2
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.5e-17 94.7 86 58.1
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-12 78.2 132 39.4
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.4e-12 77.0 129 39.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.2e-12 76.3 122 39.3
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.7e-10 72.0 68 52.9
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.6e-10 69.7 128 38.3
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-09 69.3 68 51.5
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 1.5e-09 68.9 61 54.1
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.9e-09 68.6 60 50.0
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-08 65.1 68 51.5
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-07 61.6 56 55.4
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 4.0e-07 60.8 64 48.4
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 5.2e-07 60.5 73 42.5
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 2.6e-06 58.2 64 45.3
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 4.4e-06 57.4 52 48.1


User provided reference genes

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