Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0380 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 1.9e-139 499.2 256 100.0
CDE05G2793 Ceratophyllum demersum HOM05D000001 ORTHO05D004044 5.7e-120 434.5 251 90.4
TAR624G0865 Trochodendron aralioides HOM05D000001 ORTHO05D004044 2.1e-53 213.4 257 47.1
TAR667G0003 Trochodendron aralioides HOM05D000001 ORTHO05D004044 6.6e-52 208.4 248 48.8
MBI19_g47982_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 1.1e-51 207.6 246 49.6
Atru.chr7.1828 Acer truncatum HOM05D000001 ORTHO05D004044 9.6e-51 204.5 267 46.1
Nn8g38610 Nelumbo nucifera HOM05D000001 ORTHO05D004044 2.4e-49 199.9 266 47.0
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 1.2e-48 197.6 273 46.5
Glyma.17G219600 Glycine max HOM05D000001 ORTHO05D004044 1.5e-48 197.2 268 45.1
arahy.Tifrunner.gnm1.ann1.EC7DMA Arachis hypogaea HOM05D000001 ORTHO05D004044 2.0e-48 196.8 269 45.4
Glyma.06G057700 Glycine max HOM05D000001 ORTHO05D004044 2.0e-48 196.8 259 43.6
TWI32G1352 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 2.0e-48 196.8 272 47.1
arahy.Tifrunner.gnm1.ann1.1E00SW Arachis hypogaea HOM05D000001 ORTHO05D004044 3.4e-48 196.1 269 45.4
Glyma.04G057200 Glycine max HOM05D000001 ORTHO05D004044 4.4e-48 195.7 269 43.5
Psat6g024040 Pisum sativum HOM05D000001 ORTHO05D004044 4.4e-48 195.7 270 45.6
TAR626G1342 Trochodendron aralioides HOM05D000001 ORTHO05D004044 7.6e-48 194.9 259 46.3
Aqoxy7G04098 Aquilegia oxysepala HOM05D000001 ORTHO05D004044 9.9e-48 194.5 268 43.7
TPR.G38869 Trifolium pratense HOM05D000001 ORTHO05D004044 1.7e-47 193.7 261 47.5
Ca_13092_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004044 2.2e-47 193.4 266 45.9
Ciclev10007851m.g Citrus clementina HOM05D000001 ORTHO05D004044 2.2e-47 193.4 268 45.1
Glyma.14G106500 Glycine max HOM05D000001 ORTHO05D004044 3.8e-47 192.6 270 44.8
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 4.9e-47 192.2 265 46.8
PSO724G0994 Papaver somniferum HOM05D000001 ORTHO05D004044 1.4e-46 190.7 263 45.6
Prupe.1G402100 Prunus persica HOM05D000001 ORTHO05D004044 1.4e-46 190.7 264 45.8
MD08G1046100 Malus domestica HOM05D000001 ORTHO05D004044 1.9e-46 190.3 265 46.4
QL02p017294 Quercus lobata HOM05D000001 ORTHO05D004044 1.9e-46 190.3 267 45.7
TWI34G0443 Tripterygium wilfordii HOM05D000001 ORTHO05D004044 1.9e-46 190.3 273 45.1
VMungo1309G1461 Vigna mungo HOM05D000001 ORTHO05D004044 2.4e-46 189.9 271 43.2
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 3.2e-46 189.5 263 45.2
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 5.4e-46 188.7 261 45.2
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 5.4e-46 188.7 259 44.8
CSS0022708 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 7.1e-46 188.3 267 45.7
CiPaw.15G090000 Carya illinoinensis HOM05D000001 ORTHO05D004044 7.1e-46 188.3 254 45.3
Gohir.D13G195200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 7.1e-46 188.3 261 44.4
Gorai.013G221300 Gossypium raimondii HOM05D000001 ORTHO05D004044 9.3e-46 188.0 260 44.6
Lj5g0004443 Lotus japonicus HOM05D000001 ORTHO05D004044 1.2e-45 187.6 269 43.1
Phvul.009G083600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 2.7e-45 186.4 271 42.4
arahy.Tifrunner.gnm1.ann1.WRM076 Arachis hypogaea HOM05D000001 ORTHO05D004044 3.5e-45 186.0 273 43.6
Cc08_g00980 Coffea canephora HOM05D000001 ORTHO05D004044 3.5e-45 186.0 258 44.2
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 4.6e-45 185.7 262 45.4
TWI63G1385 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.6e-45 185.7 260 44.2
arahy.Tifrunner.gnm1.ann1.8BKD36 Arachis hypogaea HOM05D000001 ORTHO05D004044 6.0e-45 185.3 273 44.0
Phvul.001G044600 Phaseolus vulgaris HOM05D000001 ORTHO05D004044 1.7e-44 183.7 277 44.4
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 1.7e-44 183.7 271 44.3
Sabra18G0045700 Salix brachista HOM05D000001 ORTHO05D004044 1.7e-44 183.7 270 45.6
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 3.0e-44 183.0 265 44.2
PSO135G0765 Papaver somniferum HOM05D000001 ORTHO05D004044 3.9e-44 182.6 263 44.5
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 5.1e-44 182.2 265 44.2
Haze_18323 Corylus avellana HOM05D000001 ORTHO05D004044 8.7e-44 181.4 253 44.3
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 8.7e-44 181.4 265 44.2
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 8.7e-44 181.4 272 44.1
Gohir.A05G037900 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.1e-43 181.0 271 42.4
Thecc.09G065500 Theobroma cacao HOM05D000001 ORTHO05D004044 1.1e-43 181.0 251 45.8
Medtr1g014880 Medicago truncatula HOM05D000001 ORTHO05D004044 1.5e-43 180.6 298 41.9
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 1.9e-43 180.3 265 43.8
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 1.9e-43 180.3 256 44.9
Actinidia29292 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.5e-43 179.9 267 43.1
Gohir.D05G039400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 2.5e-43 179.9 266 43.2
Gorai.009G039900 Gossypium raimondii HOM05D000001 ORTHO05D004044 2.5e-43 179.9 266 43.2
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 2.5e-43 179.9 271 43.2
VMungo0647G0604 Vigna mungo HOM05D000001 ORTHO05D004044 2.5e-43 179.9 271 42.8
CiPaw.16G067100 Carya illinoinensis HOM05D000001 ORTHO05D004044 4.3e-43 179.1 272 43.8
CSS0015944 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 5.6e-43 178.7 262 44.7
Manes.16G087000 Manihot esculenta HOM05D000001 ORTHO05D004044 5.6e-43 178.7 275 42.2
CSS0007474 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D004044 9.6e-43 177.9 262 44.3
CAN.G117.2 Capsicum annuum HOM05D000001 ORTHO05D004044 9.6e-43 177.9 255 43.5
CANSAT25G0247 Cannabis sativa HOM05D000001 ORTHO05D004044 1.3e-42 177.6 249 44.6
Gohir.A13G188300 Gossypium hirsutum HOM05D000001 ORTHO05D004044 1.3e-42 177.6 260 43.5
Lalb_Chr11g0063391 Lupinus albus HOM05D000001 ORTHO05D004044 1.3e-42 177.6 266 42.1
Rhsim11G0001100 Rhododendron simsii HOM05D000001 ORTHO05D004044 1.3e-42 177.6 255 43.5
ClCG05G015870 Citrullus lanatus HOM05D000001 ORTHO05D004044 1.6e-42 177.2 270 42.6
GSVIVG01035490001 Vitis vinifera HOM05D000001 ORTHO05D004044 2.1e-42 176.8 252 43.7
MELO3C016924.2 Cucumis melo HOM05D000001 ORTHO05D004044 2.8e-42 176.4 269 42.8
CsaV3_4G036160 Cucumis sativus L. HOM05D000001 ORTHO05D004044 2.8e-42 176.4 269 42.0
Peaxi162Scf00327g00026 Petunia axillaris HOM05D000001 ORTHO05D004044 2.8e-42 176.4 264 42.0
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 2.8e-42 176.4 246 43.5
Lalb_Chr22g0349641 Lupinus albus HOM05D000001 ORTHO05D004044 3.6e-42 176.0 254 44.1
PGR142G0487 Punica granatum HOM05D000001 ORTHO05D004044 4.8e-42 175.6 271 45.0
Nitab4.5_0004440g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004044 1.4e-41 174.1 263 41.8
MBI19_g09929_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004044 3.1e-41 172.9 224 46.9
Nitab4.5_0009247g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004044 3.1e-41 172.9 263 41.8
Lj1g0000975 Lotus japonicus HOM05D000001 ORTHO05D004044 4.0e-41 172.6 268 42.9
Sopen08g016700 Solanum pennellii HOM05D000001 ORTHO05D004044 4.0e-41 172.6 268 41.4
PGSC0003DMG400012991 Solanum tuberosum HOM05D000001 ORTHO05D004044 4.0e-41 172.6 268 41.4
Sp4g06560 Schrenkiella parvula HOM05D000001 ORTHO05D004044 5.3e-41 172.2 275 40.7
Solyc08g061320.3 Solanum lycopersicum HOM05D000001 ORTHO05D004044 5.3e-41 172.2 268 41.4
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 6.9e-41 171.8 256 42.6
Lj7C209T10 Lonicera japonica HOM05D000001 ORTHO05D004044 2.6e-40 169.9 258 45.3
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 4.5e-40 169.1 258 41.9
Carub.0004s0615 Capsella rubella HOM05D000001 ORTHO05D004044 1.3e-39 167.5 270 40.4
Sc06g0000110 Simmondsia chinensis HOM05D000001 ORTHO05D004044 1.3e-39 167.5 266 39.8
Sed0004805 Sechium edule HOM05D000001 ORTHO05D004044 1.7e-39 167.2 268 41.4
Aa31LG5G9520 Aethionema arabicum HOM05D000001 ORTHO05D004044 8.4e-39 164.9 269 40.1
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 2.4e-38 163.3 255 41.2
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 2.4e-38 163.3 261 40.2
Duzib168G1373 Durio zibethinus HOM05D000001 ORTHO05D004044 3.2e-38 162.9 259 43.2
unitig_32.g10913 Utricularia gibba HOM05D000001 ORTHO05D004044 4.2e-38 162.5 264 43.2
Sed0025024 Sechium edule HOM05D000001 ORTHO05D004044 5.4e-38 162.2 270 41.5
DCAR_003727 Daucus carota HOM05D000001 ORTHO05D004044 1.6e-37 160.6 266 39.5
Duzib187G1939 Durio zibethinus HOM05D000001 ORTHO05D004044 1.6e-37 160.6 263 41.4
Thhalv10001942m.g Eutrema salsugineum HOM05D000001 ORTHO05D004044 1.6e-37 160.6 283 38.9
BcaB08g35273 Brassica carinata HOM05D000001 ORTHO05D004044 2.1e-37 160.2 264 42.0
ECA236G1474 Erigeron canadensis HOM05D000001 ORTHO05D004044 2.7e-37 159.8 270 40.0
AT2G26280 Arabidopsis thaliana HOM05D000001 ORTHO05D004044 3.5e-37 159.5 254 40.2
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 3.5e-37 159.5 264 43.9
AL4G18860 Arabidopsis lyrata HOM05D000001 ORTHO05D004044 4.6e-37 159.1 263 39.9
SalBow1G0904 Salvia bowleyana HOM05D000001 ORTHO05D004044 4.6e-37 159.1 262 40.8
AUR62037726 Chenopodium quinoa HOM05D000001 ORTHO05D004044 7.9e-37 158.3 271 37.3
Actinidia16899 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.0e-36 157.9 270 40.7
THA.LOC104819898 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 3.0e-36 156.4 260 39.2
Manes.03G056801 Manihot esculenta HOM05D000001 ORTHO05D004044 6.7e-36 155.2 276 38.8
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 8.7e-36 154.8 252 41.3
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 1.9e-35 153.7 272 40.1
Hund25544 Selenicereus undatus HOM05D000001 ORTHO05D004044 1.9e-35 153.7 257 41.6
ECA240G1094 Erigeron canadensis HOM05D000001 ORTHO05D004044 3.3e-35 152.9 262 40.5
SGA_v2.0_scaffold169G38720 Striga asiatica HOM05D000001 ORTHO05D004044 3.3e-35 152.9 254 40.6
Actinidia29353 Actinidia chinensis HOM05D000001 ORTHO05D004044 5.6e-35 152.1 276 40.2
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 5.6e-35 152.1 263 39.5
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 5.6e-35 152.1 264 40.9
Actinidia39673 Actinidia chinensis HOM05D000001 ORTHO05D004044 1.6e-34 150.6 268 39.9
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 2.1e-34 150.2 243 39.9
EL10Ac2g02405 Beta vulgaris HOM05D000001 ORTHO05D004044 4.8e-34 149.1 269 36.8
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 1.8e-33 147.1 234 44.0
THA.LOC104804451 Tarenaya hassleriana HOM05D000001 ORTHO05D004044 1.8e-33 147.1 262 41.2
unitig_748.g8235 Utricularia gibba HOM05D000001 ORTHO05D004044 1.8e-33 147.1 255 38.4
unitig_4.g30334 Utricularia gibba HOM05D000001 ORTHO05D004044 4.0e-33 146.0 255 38.0
Gorai.004G286100 Gossypium raimondii HOM05D000001 ORTHO05D004044 5.3e-33 145.6 281 38.1
Gohir.A08G247200 Gossypium hirsutum HOM05D000001 ORTHO05D004044 6.9e-33 145.2 276 38.4
AUR62020279 Chenopodium quinoa HOM05D000001 ORTHO05D004044 1.2e-32 144.4 266 37.6
SGA_v2.0_scaffold163G37994 Striga asiatica HOM05D000001 ORTHO05D004044 1.5e-32 144.1 238 41.6
Gohir.D08G268400 Gossypium hirsutum HOM05D000001 ORTHO05D004044 3.4e-32 142.9 281 37.7
BraA09t40935Z Brassica rapa HOM05D000001 ORTHO05D004044 5.8e-32 142.1 267 39.7
BolC8t51400H Brassica oleracea HOM05D000001 ORTHO05D004044 7.6e-32 141.7 268 39.9
A09p55320 Brassica napus HOM05D000001 ORTHO05D004044 9.9e-32 141.4 267 39.3
BcaC07g40830 Brassica carinata HOM05D000001 ORTHO05D004044 1.3e-31 141.0 268 39.2
C08p38250 Brassica napus HOM05D000001 ORTHO05D004044 1.7e-31 140.6 269 39.8
Os06g0199200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 1.1e-30 137.9 249 39.0
Dinv41848 Davidia involucrata HOM05D000001 ORTHO05D004044 2.5e-30 136.7 258 39.1
HanXRQChr09g0248701 Helianthus annuus HOM05D000001 ORTHO05D004044 5.5e-30 135.6 251 37.8
Duzib150G1238 Durio zibethinus HOM05D000001 ORTHO05D004044 1.3e-28 131.0 245 39.2
Lsat_1_v5_gn_8_149721 Lactuca sativa HOM05D000001 ORTHO05D004044 1.9e-27 127.1 261 40.6
Zm00001eb278590 Zea mays HOM05D000001 ORTHO05D004044 7.4e-27 125.2 247 38.5
SEGI_25644 Sequoiadendron giganteum HOM05D000001 ORTHO05D004044 2.6e-24 116.7 228 36.8
Migut.A00058 Erythranthe guttata HOM05D000001 ORTHO05D004044 3.4e-24 116.3 237 35.9
HPP92_011061 Vanilla planifolia HOM05D000001 ORTHO05D004044 1.3e-23 114.4 253 34.0
SalBow4G2835 Salvia bowleyana HOM05D000001 ORTHO05D004044 4.9e-23 112.5 239 36.4
Os02g0780550 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 3.2e-22 109.8 254 35.4
TAR636G0641 Trochodendron aralioides HOM05D000001 ORTHO05D004044 4.2e-22 109.4 155 40.6
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 2.3e-20 103.6 233 35.2
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 8.7e-20 101.7 233 34.8
Zm00001eb005950 Zea mays HOM05D000001 ORTHO05D004044 1.1e-19 101.3 180 37.2
CARHR115120 Cardamine hirsuta HOM05D000001 ORTHO05D004044 5.7e-19 99.0 160 36.9
ATR0598G100 Amborella trichopoda HOM05D000001 ORTHO05D004044 9.7e-19 98.2 270 33.0
Actinidia01324 Actinidia chinensis HOM05D000001 ORTHO05D004044 2.8e-18 96.7 149 40.9
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 6.3e-18 95.5 256 32.8
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 1.1e-17 94.7 251 32.3
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 2.4e-17 93.6 252 31.7
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 2.4e-17 93.6 252 31.7
Os03g0180300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004044 3.4e-16 89.7 196 31.6
Pp3c4_25250 Physcomitrium patens HOM05D000001 ORTHO05D004044 7.7e-16 88.6 290 31.0
SGA_v2.0_scaffold20G09145 Striga asiatica HOM05D000001 ORTHO05D004044 1.6e-13 80.9 246 30.1
Psat0s3154g0080 Pisum sativum HOM05D000001 ORTHO05D004044 7.9e-13 78.6 123 38.2
Psat0s3154g0240 Pisum sativum HOM05D000001 ORTHO05D004044 1.4e-12 77.8 123 39.0
Psat0s3775g0160 Pisum sativum HOM05D000001 ORTHO05D004044 1.4e-12 77.8 123 39.0
Pp3c26_4880 Physcomitrium patens HOM05D000001 ORTHO05D004044 2.3e-12 77.0 264 29.2
Oeu060162.1 Olea europaea HOM05D000001 ORTHO05D004044 3.3e-11 73.2 150 34.7
SHI28008 Sapria himalayana HOM05D000001 ORTHO05D004044 4.3e-11 72.8 251 30.3
SMO356G0739 Selaginella moellendorffii HOM05D000001 ORTHO05D004044 2.0e-08 63.9 264 29.2
Zm00001eb373910 Zea mays HOM05D000001 ORTHO05D004044 5.9e-08 62.4 78 42.3
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.2e-06 56.2 62 45.2


User provided reference genes

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