Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.0e-168 596.7 295 100.0
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 6.8e-109 397.9 294 66.3
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.2e-105 387.1 293 64.2
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.7e-105 386.0 296 63.9
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 3.5e-105 385.6 293 62.1
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 3.5e-105 385.6 293 64.5
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.7e-104 383.3 293 61.8
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 3.9e-104 382.1 290 63.4
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.5e-103 380.2 293 63.1
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 4.3e-103 378.6 293 63.5
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 5.6e-103 378.3 296 62.8
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.2e-102 377.1 294 62.9
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.6e-102 376.7 291 63.9
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.1e-102 376.3 293 62.1
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.8e-102 375.9 294 61.9
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 2.8e-102 375.9 296 60.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 4.7e-102 375.2 293 62.8
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 4.7e-102 375.2 294 61.9
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 4.7e-102 375.2 300 60.7
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 6.2e-102 374.8 291 61.2
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 6.2e-102 374.8 291 62.2
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.1e-101 374.0 291 63.6
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.3e-101 372.9 294 61.9
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 8.9e-101 370.9 294 61.9
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.5e-100 370.2 294 60.5
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.5e-100 370.2 291 61.2
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 7.5e-100 367.9 291 60.1
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 7.5e-100 367.9 310 59.4
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 9.8e-100 367.5 291 60.1
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-99 367.1 298 61.4
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.7e-99 366.7 296 61.8
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 4.9e-99 365.2 296 61.5
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.3e-99 364.4 291 59.8
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.1e-98 364.0 296 62.2
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.9e-98 363.2 296 60.8
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 3.2e-98 362.5 299 59.2
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 5.4e-98 361.7 312 57.1
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 5.4e-98 361.7 299 59.2
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 9.2e-98 360.9 297 60.3
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 1.2e-97 360.5 295 60.0
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 1.6e-97 360.1 290 61.4
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 2.1e-97 359.8 292 59.6
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 3.5e-97 359.0 290 57.9
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 7.8e-97 357.8 293 60.8
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 7.8e-97 357.8 288 59.4
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 6.6e-96 354.8 301 59.8
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 1.1e-95 354.0 296 57.4
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 4.3e-95 352.1 288 59.7
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 5.6e-95 351.7 294 59.2
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 7.3e-95 351.3 294 57.8
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 2.0e-92 343.2 279 61.6
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.6e-92 342.8 294 57.5
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 4.4e-92 342.0 296 57.1
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 5.8e-92 341.7 292 56.8
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.7e-91 340.1 296 54.7
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.7e-91 340.1 318 54.1
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.7e-91 339.0 295 56.9
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.9e-90 336.7 301 54.8
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.9e-90 336.7 301 54.8
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.4e-90 336.3 296 55.4
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 4.1e-90 335.5 297 55.9
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 9.2e-90 334.3 296 54.4
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.6e-89 333.6 255 63.1
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.7e-88 330.1 312 51.3
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 1.7e-88 330.1 264 61.4
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.7e-88 330.1 296 54.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 2.3e-88 329.7 293 56.7
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 3.0e-88 329.3 295 54.2
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 6.2e-86 321.6 327 50.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 8.9e-85 317.8 298 54.0
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 1.2e-84 317.4 249 59.8
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 2.6e-84 316.2 294 55.4
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 7.6e-84 314.7 364 47.5
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 6.4e-83 311.6 280 55.0
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 3.2e-82 309.3 288 53.8
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.1e-81 306.6 280 52.5
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.0e-80 302.8 274 53.6
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.3e-79 299.3 299 52.5
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 4.0e-77 292.4 298 51.0
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-76 290.8 311 51.4
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.5e-76 290.4 227 62.6
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 2.0e-76 290.0 239 58.6
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.6e-76 288.1 201 66.2
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 4.9e-75 285.4 200 67.5
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 3.2e-74 282.7 201 64.7
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 7.1e-74 281.6 231 61.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.6e-73 280.4 269 53.2
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 2.7e-73 279.6 228 59.6
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 3.9e-72 275.8 254 54.3
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 3.3e-71 272.7 304 44.4
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 9.9e-68 261.2 175 67.4
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 7.1e-66 255.0 211 59.7
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 7.1e-66 255.0 291 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 3.0e-64 249.6 290 41.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.1e-63 247.7 293 42.7
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 5.8e-60 235.3 295 46.4
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 1.1e-58 231.1 207 55.1
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 3.9e-56 222.6 291 44.0
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 4.8e-54 215.7 199 52.3
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 6.2e-54 215.3 173 59.0
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.1e-53 213.0 203 53.2
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 1.2e-52 211.1 185 58.4
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 3.8e-51 206.1 190 56.8
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 2.5e-50 203.4 185 55.1
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 5.1e-48 195.7 247 40.1
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.9e-43 179.9 124 67.7
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 2.5e-39 166.8 125 58.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.1e-33 147.1 327 30.0
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 3.0e-32 143.3 95 69.5
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 2.2e-30 137.1 95 66.3
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 5.3e-29 132.5 96 63.5
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 5.3e-29 132.5 97 66.0
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.5e-28 131.0 98 62.2
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.6e-25 120.9 90 62.2
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 6.7e-24 115.5 122 48.4
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-23 114.4 150 46.0
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 4.8e-22 109.4 76 64.5
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 2.0e-20 104.0 81 55.6
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.0e-19 101.7 171 29.8
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 3.2e-18 96.7 133 42.9
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-17 94.7 119 47.1
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 4.7e-17 92.8 68 61.8
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 6.1e-17 92.4 108 48.1
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.8e-16 90.9 68 60.3
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.7e-14 84.3 176 27.3
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 4.1e-13 79.7 106 43.4
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.0e-11 75.1 97 42.3
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 1.3e-11 74.7 56 57.1
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 6.5e-11 72.4 95 46.3
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-10 71.6 59 57.6
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.8e-08 64.3 58 55.2
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 5.2e-08 62.8 100 38.0


User provided reference genes

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