Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.5e-167 592.0 302 100.0
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.0e-148 529.3 302 89.7
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 4.3e-26 122.9 376 28.2
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.1e-24 118.2 444 29.3
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 3.4e-23 113.2 303 31.7
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.3e-22 111.3 376 27.4
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.7e-22 110.9 338 32.2
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 2.2e-22 110.5 356 31.2
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 2.2e-22 110.5 361 32.4
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 3.2e-21 106.7 276 29.3
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 4.2e-21 106.3 458 26.6
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 3.5e-20 103.2 277 30.7
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 4.6e-20 102.8 391 29.4
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 6.0e-20 102.4 128 43.8
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 1.0e-19 101.7 284 29.2
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.3e-19 100.5 478 24.1
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 3.9e-19 99.8 369 27.9
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.1e-18 98.2 303 27.4
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.9e-18 97.4 365 28.5
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.9e-18 97.4 475 24.8
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 3.3e-18 96.7 309 27.2
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 3.3e-18 96.7 469 24.7
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 4.3e-18 96.3 311 27.3
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 5.7e-18 95.9 305 30.8
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 7.4e-18 95.5 325 26.2
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 9.6e-18 95.1 263 30.8
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 1.3e-17 94.7 71 60.6
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 2.1e-17 94.0 280 28.9
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 2.1e-17 94.0 299 26.4
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 2.8e-17 93.6 307 29.0
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 3.7e-17 93.2 60 75.0
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 6.3e-17 92.4 297 28.6
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 6.3e-17 92.4 159 37.1
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 6.3e-17 92.4 159 37.1
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 8.2e-17 92.0 468 25.4
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 3.1e-16 90.1 201 35.3
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 3.1e-16 90.1 190 36.8
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 4.1e-16 89.7 153 41.8
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 5.3e-16 89.4 99 47.5
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 5.3e-16 89.4 470 23.8
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 6.9e-16 89.0 180 36.7
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 6.9e-16 89.0 463 25.5
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 1.2e-15 88.2 132 37.9
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 1.2e-15 88.2 89 47.2
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 1.5e-15 87.8 70 55.7
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 2.6e-15 87.0 73 53.4
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 2.6e-15 87.0 106 45.3
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 3.4e-15 86.7 146 38.4
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.9e-15 85.9 355 27.0
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 7.6e-15 85.5 188 33.5
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 7.6e-15 85.5 71 52.1
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 7.6e-15 85.5 218 32.6
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 1.3e-14 84.7 195 31.8
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.3e-14 84.7 177 34.5
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.3e-14 84.7 71 52.1
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 1.3e-14 84.7 71 50.7
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 1.3e-14 84.7 91 44.0
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.7e-14 84.3 69 55.1
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.9e-14 83.6 71 56.3
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 3.8e-14 83.2 71 50.7
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 3.8e-14 83.2 169 37.3
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 6.5e-14 82.4 123 41.5
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 6.5e-14 82.4 98 45.9
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 6.5e-14 82.4 262 28.6
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 8.4e-14 82.0 317 24.0
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 8.4e-14 82.0 89 42.7
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 1.1e-13 81.6 309 25.2
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 1.4e-13 81.3 303 25.4
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 1.9e-13 80.9 300 26.0
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.9e-13 80.9 71 49.3
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 1.9e-13 80.9 99 43.4
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 1.9e-13 80.9 414 25.4
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 2.5e-13 80.5 300 25.7
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 4.2e-13 79.7 163 34.4
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 4.2e-13 79.7 213 32.9
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 4.2e-13 79.7 295 26.4
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 4.2e-13 79.7 300 25.0
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 7.2e-13 79.0 460 24.8
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 7.2e-13 79.0 195 32.8
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 9.3e-13 78.6 207 34.8
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.2e-12 78.2 475 23.2
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.1e-12 77.4 161 34.8
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.1e-12 77.4 190 32.6
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 2.1e-12 77.4 96 39.6
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 2.7e-12 77.0 240 28.8
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 2.7e-12 77.0 163 38.7
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 3.5e-12 76.6 302 25.5
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 1.0e-11 75.1 64 51.6
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.0e-11 73.6 73 49.3
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 3.9e-11 73.2 99 44.4
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 3.9e-11 73.2 66 54.5
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 6.7e-11 72.4 308 25.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 6.7e-11 72.4 213 29.1
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.5e-10 71.2 302 25.8
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.5e-10 71.2 109 42.2
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.5e-10 71.2 210 28.1
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 1.5e-10 71.2 68 51.5
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 1.5e-10 71.2 228 29.8
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.9e-10 70.9 199 27.6
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 2.5e-10 70.5 82 47.6
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 4.3e-10 69.7 89 40.4
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 4.3e-10 69.7 214 31.8
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 4.3e-10 69.7 214 31.8
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 4.3e-10 69.7 163 30.1
ATR0609G018 Amborella trichopoda HOM05D007504 ORTHO05D007629 5.7e-10 69.3 161 37.3
Os12g0506700 Oryza sativa ssp. japonica HOM05D007504 ORTHO05D007629 9.7e-10 68.6 80 40.0
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.3e-09 68.2 79 36.7
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.6e-09 67.8 65 49.2
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 2.2e-09 67.4 281 24.6
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 4.8e-09 66.2 238 25.2
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 8.2e-09 65.5 205 30.2
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.1e-08 65.1 183 29.0
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 1.4e-08 64.7 227 25.6
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 1.8e-08 64.3 124 35.5
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 1.5e-07 61.2 55 52.7
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 4.5e-07 59.7 156 32.1
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 2.2e-06 57.4 51 51.0
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 6.5e-06 55.8 98 38.8


User provided reference genes

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