Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 1.1e-88 330.5 240 100.0
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 5.7e-21 105.5 236 53.0
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 9.7e-21 104.8 237 50.6
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 1.3e-20 104.4 236 55.5
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 2.8e-20 103.2 237 53.6
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 3.7e-20 102.8 236 52.5
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 2.4e-19 100.1 235 56.2
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 2.4e-19 100.1 236 52.5
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 2.4e-19 100.1 236 52.5
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.7e-17 94.0 233 51.5
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 4.2e-16 89.4 219 52.5
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 2.7e-15 86.7 236 49.2
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 6.1e-15 85.5 237 27.8
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 6.1e-15 85.5 236 51.7
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 1.8e-14 84.0 234 52.6
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 8.8e-14 81.6 235 50.6
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 2.0e-13 80.5 235 50.6
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 7.4e-13 78.6 237 49.8
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 8.2e-12 75.1 169 60.9
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 8.2e-12 75.1 234 50.0
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 1.4e-11 74.3 236 51.3
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 2.4e-11 73.6 194 33.0
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 9.1e-11 71.6 65 46.2
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 2.0e-10 70.5 83 42.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.0e-10 70.5 63 47.6
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 1.0e-09 68.2 59 49.2
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 1.3e-09 67.8 78 44.9
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.7e-09 67.4 173 59.0
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 2.2e-09 67.0 216 51.4
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 2.2e-09 67.0 237 47.3
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 3.8e-09 66.2 167 64.1
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 3.8e-09 66.2 62 46.8
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 3.8e-09 66.2 167 65.3
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 3.8e-09 66.2 171 60.8
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.1e-08 64.7 66 45.5
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 1.1e-08 64.7 51 52.9
AUR62007125 Chenopodium quinoa HOM05D000093 ORTHO05D007866 1.4e-08 64.3 219 50.2
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.4e-08 64.3 56 50.0
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 1.4e-08 64.3 53 52.8
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 1.4e-08 64.3 65 41.5
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 1.9e-08 63.9 66 43.9
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 1.9e-08 63.9 89 36.0
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 3.2e-08 63.2 56 51.8
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 4.2e-08 62.8 51 51.0
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 4.2e-08 62.8 54 50.0
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 5.5e-08 62.4 54 50.0
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 5.5e-08 62.4 58 44.8
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 7.2e-08 62.0 62 48.4
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 9.4e-08 61.6 237 43.9
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 9.4e-08 61.6 66 48.5
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 2.1e-07 60.5 56 50.0
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 2.7e-07 60.1 51 49.0
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 2.7e-07 60.1 61 44.3
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.7e-07 60.1 37 64.9
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 2.7e-07 60.1 49 49.0
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 4.7e-07 59.3 51 47.1
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 8.0e-07 58.5 99 31.3
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 8.0e-07 58.5 65 47.7
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 8.0e-07 58.5 51 49.0
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 1.0e-06 58.2 89 33.7
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.0e-06 58.2 65 44.6
PSO017G1195 Papaver somniferum HOM05D008994 ORTHO05D010954 1.0e-06 58.2 59 47.5
CANSAT78G1122 Cannabis sativa HOM05D000162 ORTHO05D000090 1.4e-06 57.8 106 30.2
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 1.4e-06 57.8 50 48.0
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 1.4e-06 57.8 98 29.6
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 1.8e-06 57.4 56 42.9
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 1.8e-06 57.4 49 51.0
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 1.8e-06 57.4 37 62.2
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.8e-06 57.4 86 32.6
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.8e-06 57.4 33 72.7
arahy.Tifrunner.gnm1.ann1.0N6WQ2 Arachis hypogaea HOM05D000855 ORTHO05D008530 2.3e-06 57.0 77 35.1
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 2.3e-06 57.0 82 30.5
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 2.3e-06 57.0 236 47.5
CSS0036990 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 3.0e-06 56.6 70 40.0
CSS0040738 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 3.0e-06 56.6 70 40.0
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 3.9e-06 56.2 105 28.6
BcaC01g00449 Brassica carinata HOM05D000891 ORTHO05D000761 3.9e-06 56.2 105 28.6
A08p22340 Brassica napus HOM05D000891 ORTHO05D000761 3.9e-06 56.2 105 28.6
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 3.9e-06 56.2 105 28.6
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 3.9e-06 56.2 105 28.6
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 3.9e-06 56.2 105 28.6
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 3.9e-06 56.2 99 30.3
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 5.2e-06 55.8 37 62.2
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 5.2e-06 55.8 95 30.5
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 5.2e-06 55.8 95 30.5
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 6.7e-06 55.5 63 38.1
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 6.7e-06 55.5 47 51.1
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 6.7e-06 55.5 171 50.9
Eucgr.H02555 Eucalyptus grandis HOM05D000037 ORTHO05D000648 6.7e-06 55.5 101 27.7
FAN22G0540 Fragaria x ananassa HOM05D000001 ORTHO05D000648 6.7e-06 55.5 99 32.3
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 8.8e-06 55.1 68 38.2
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 8.8e-06 55.1 37 56.8
FAN16G2089 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.8e-06 55.1 55 45.5
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 8.8e-06 55.1 237 43.9
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 8.8e-06 55.1 77 36.4


User provided reference genes

Program Settings