Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0336 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 3.1e-262 907.9 452 100.0
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 2.9e-199 698.7 415 82.2
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 1.1e-198 696.8 417 81.3
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 5.4e-198 694.5 415 81.0
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 1.6e-197 693.0 415 81.7
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 2.0e-197 692.6 415 81.2
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 2.7e-197 692.2 415 81.4
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 6.0e-197 691.0 415 80.2
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 3.9e-196 688.3 415 80.7
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 5.0e-196 688.0 415 81.0
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 5.0e-196 688.0 415 80.2
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 6.6e-196 687.6 415 81.0
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 6.6e-196 687.6 415 80.5
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 8.6e-196 687.2 415 80.7
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 1.5e-195 686.4 415 80.2
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.9e-195 686.0 416 79.8
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 1.9e-195 686.0 416 81.0
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 1.9e-195 686.0 415 80.0
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 2.5e-195 685.6 448 76.1
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 3.3e-195 685.3 416 79.8
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 3.3e-195 685.3 415 81.2
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 7.3e-195 684.1 415 80.5
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 9.5e-195 683.7 415 79.5
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.2e-194 683.3 416 79.3
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 1.2e-194 683.3 415 78.6
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 2.1e-194 682.6 415 80.5
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 2.1e-194 682.6 415 80.5
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 2.8e-194 682.2 416 79.6
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 2.8e-194 682.2 415 80.2
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 4.7e-194 681.4 415 79.0
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 8.0e-194 680.6 415 79.5
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.1e-193 680.2 415 79.5
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 1.1e-193 680.2 415 79.8
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 1.4e-193 679.9 416 78.6
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 1.8e-193 679.5 416 78.8
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 2.3e-193 679.1 415 79.0
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 3.1e-193 678.7 426 77.9
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 3.1e-193 678.7 415 80.0
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 5.2e-193 677.9 415 79.0
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 2.0e-192 676.0 415 78.8
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 4.4e-192 674.9 446 74.9
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 1.7e-191 672.9 415 79.0
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 3.7e-191 671.8 415 78.6
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 3.7e-191 671.8 415 78.6
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 6.4e-191 671.0 416 79.6
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 1.4e-190 669.8 415 78.1
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 1.9e-190 669.5 415 78.6
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 3.2e-190 668.7 415 78.8
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 9.2e-190 667.2 457 73.5
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.6e-189 666.4 415 78.3
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 2.0e-189 666.0 415 78.3
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 2.7e-189 665.6 441 74.1
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 4.6e-189 664.8 415 77.1
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 4.6e-189 664.8 415 78.1
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 7.8e-189 664.1 416 78.4
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 7.8e-189 664.1 415 78.1
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 2.3e-188 662.5 433 75.5
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 3.0e-188 662.1 415 79.5
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 3.9e-188 661.8 415 78.6
arahy.Tifrunner.gnm1.ann1.ZBDE9H Arachis hypogaea HOM05D003435 ORTHO05D004032 5.0e-188 661.4 401 79.1
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 5.0e-188 661.4 402 79.6
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 5.0e-188 661.4 417 76.0
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 5.0e-188 661.4 416 76.9
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 6.6e-188 661.0 427 76.6
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 8.6e-188 660.6 415 77.3
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 8.6e-188 660.6 415 76.9
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 1.1e-187 660.2 415 77.6
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 1.5e-187 659.8 415 77.3
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 1.9e-187 659.4 415 77.8
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 7.3e-187 657.5 416 76.2
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 7.3e-187 657.5 416 76.4
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 9.5e-187 657.1 416 76.4
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 1.2e-186 656.8 415 75.9
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 3.6e-186 655.2 415 75.2
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 3.6e-186 655.2 415 75.9
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 8.1e-186 654.1 416 76.4
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 8.1e-186 654.1 416 76.4
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 8.1e-186 654.1 423 75.4
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 1.1e-185 653.7 416 76.4
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 1.1e-185 653.7 416 76.4
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 1.1e-185 653.7 416 76.9
Hund13567 Selenicereus undatus HOM05D003435 ORTHO05D004032 1.1e-185 653.7 401 77.3
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 1.4e-185 653.3 416 76.2
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 1.4e-185 653.3 416 76.2
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 1.4e-185 653.3 416 76.7
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 1.8e-185 652.9 416 76.2
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 3.1e-185 652.1 415 75.4
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 3.1e-185 652.1 417 76.7
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 5.2e-185 651.4 425 75.8
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 6.8e-185 651.0 416 75.7
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 1.7e-183 646.4 416 75.7
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 2.4e-182 642.5 416 75.7
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 4.1e-182 641.7 421 75.5
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 1.6e-181 639.8 421 75.5
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 3.0e-180 635.6 415 74.5
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 1.1e-177 627.1 456 70.4
VMungo0251G2917 Vigna mungo HOM05D003435 ORTHO05D004032 1.9e-174 616.3 373 79.4
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 3.5e-173 612.1 437 70.7
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 1.2e-170 603.6 416 69.7
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 2.8e-170 602.4 442 68.3
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 2.7e-165 585.9 426 70.4
QL06p042317 Quercus lobata HOM05D003435 ORTHO05D004032 1.9e-163 579.7 335 83.0
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 2.5e-163 579.3 416 70.7
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 3.8e-159 565.5 482 61.4
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 7.1e-158 561.2 433 65.4
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 1.2e-157 560.5 445 66.7
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 1.4e-153 547.0 419 65.2
VMungo1215G0393 Vigna mungo HOM05D003435 ORTHO05D004032 1.5e-152 543.5 335 77.3
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 1.1e-142 510.8 415 62.4
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 4.5e-136 488.8 420 59.8
CDE05G2519 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.3e-127 460.7 240 93.3
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 1.4e-126 457.2 420 54.8
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 9.7e-123 444.5 283 77.0
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 3.2e-118 429.5 429 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 6.3e-114 415.2 420 54.5
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 1.7e-111 407.1 341 60.1
Pp3c7_4380 Physcomitrium patens HOM05D000091 ORTHO05D004032 9.4e-110 401.4 376 53.7
Pp3c11_22390 Physcomitrium patens HOM05D000091 ORTHO05D004032 8.8e-108 394.8 405 49.6
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.7e-98 364.0 246 73.6
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 2.8e-98 363.2 246 73.6
Hma1.2p1_1744F.1_g300230 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 1.2e-96 357.8 322 61.2
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 6.6e-87 325.5 284 62.0
Gorai.007G210900 Gossypium raimondii HOM05D003435 ORTHO05D004032 6.4e-82 308.9 171 86.5
Gohir.D11G197000 Gossypium hirsutum HOM05D003435 ORTHO05D004032 9.2e-81 305.1 171 85.4
Gohir.A11G190301 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.2e-80 304.7 171 84.8
Cpa.g.sc6.380 Carica papaya HOM05D003435 ORTHO05D004032 1.9e-73 280.8 204 68.1
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 4.3e-70 269.6 442 38.2
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 1.9e-65 254.2 175 71.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 3.2e-65 253.4 154 79.9
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 4.4e-59 233.0 453 34.7
SMO304G0043 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 6.0e-56 222.6 395 36.7
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.5e-54 217.2 121 91.7
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 2.0e-51 207.6 170 61.8
Rhsim03G0142900 Rhododendron simsii HOM05D000230 ORTHO05D000176 4.0e-44 183.3 115 77.4
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 1.3e-37 161.8 176 52.8
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 2.1e-24 117.9 80 73.8
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.3e-21 108.6 60 81.7
Duzib187G1677 Durio zibethinus HOM05D003435 ORTHO05D004032 6.3e-21 106.3 69 72.5
Peaxi162Scf00691g00516 Petunia axillaris HOM05D003435 ORTHO05D004032 1.8e-20 104.8 55 83.6
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 8.5e-18 95.9 59 76.3
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 1.0e-10 72.4 45 71.1
SMO014G0036 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 1.6e-08 65.1 78 43.6
SHI22841 Sapria himalayana HOM05D000002 ORTHO05D000001 6.7e-07 59.7 52 61.5


User provided reference genes

Program Settings