Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 0.0e+00 1721.1 869 100.0
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1248.4 885 72.1
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1245.0 885 71.1
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1221.8 872 71.6
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 0.0e+00 1210.7 877 69.7
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1209.9 883 70.1
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1209.9 883 70.1
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 0.0e+00 1206.4 883 69.2
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1205.7 881 69.5
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1204.1 881 69.2
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 0.0e+00 1203.3 883 70.1
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 0.0e+00 1201.8 878 69.4
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 0.0e+00 1198.0 891 68.8
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1197.2 881 69.2
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 0.0e+00 1196.4 882 68.9
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1195.3 886 68.2
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1194.5 895 68.4
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1193.3 887 68.9
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 0.0e+00 1193.3 901 68.0
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1192.6 894 68.0
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1190.6 886 67.9
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 0.0e+00 1187.6 888 67.6
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 0.0e+00 1186.4 882 69.0
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 0.0e+00 1185.6 882 68.7
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 0.0e+00 1183.7 885 67.7
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 0.0e+00 1182.5 892 68.4
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 0.0e+00 1181.4 884 68.3
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 0.0e+00 1180.6 883 67.7
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 0.0e+00 1178.3 889 67.7
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1177.5 886 68.4
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 0.0e+00 1175.6 880 68.1
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 0.0e+00 1175.2 889 68.2
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 0.0e+00 1172.9 918 65.7
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 0.0e+00 1171.8 882 68.0
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1171.0 885 67.3
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1171.0 883 68.0
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 0.0e+00 1169.8 886 67.3
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1169.5 879 66.4
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1168.3 875 68.1
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 0.0e+00 1167.1 883 67.8
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 0.0e+00 1164.4 889 67.5
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1163.3 884 67.3
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1161.0 895 66.4
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 0.0e+00 1157.9 882 66.3
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1156.7 876 67.2
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 0.0e+00 1154.0 878 66.7
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1151.3 879 66.0
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1151.0 921 65.3
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 0.0e+00 1150.2 869 66.9
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 0.0e+00 1149.8 885 66.0
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1148.7 885 66.2
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1147.5 883 66.6
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 0.0e+00 1146.7 869 66.6
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 0.0e+00 1146.0 869 66.5
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1145.2 885 65.9
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 0.0e+00 1144.4 874 66.5
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 0.0e+00 1144.0 869 66.3
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 0.0e+00 1143.3 889 66.3
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 0.0e+00 1142.9 884 65.8
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 0.0e+00 1140.2 928 63.7
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 0.0e+00 1137.9 869 66.1
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 0.0e+00 1137.5 892 65.6
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 0.0e+00 1137.1 874 65.3
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1136.7 886 66.3
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 0.0e+00 1136.3 880 65.6
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 0.0e+00 1134.8 869 66.2
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 0.0e+00 1131.3 883 65.6
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1130.9 882 65.2
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1125.9 882 65.9
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 0.0e+00 1125.5 880 65.2
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1123.2 871 65.9
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1122.5 871 65.9
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1121.7 871 65.8
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1111.7 869 65.2
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 0.0e+00 1110.1 919 62.6
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1107.0 886 64.7
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 0.0e+00 1104.4 916 62.9
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 0.0e+00 1104.4 730 75.3
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 0.0e+00 1102.0 913 62.9
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 0.0e+00 1102.0 906 63.1
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 0.0e+00 1102.0 909 63.3
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 0.0e+00 1100.1 857 65.8
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 0.0e+00 1099.3 866 64.8
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1091.6 895 64.1
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 0.0e+00 1090.9 884 64.4
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 0.0e+00 1090.5 873 64.6
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1088.9 880 63.0
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1087.0 888 62.7
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1083.2 887 62.3
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 0.0e+00 1081.6 866 64.7
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 0.0e+00 1077.4 893 63.9
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 2.7e-307 1058.5 883 62.9
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 1.4e-300 1036.2 870 61.1
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 1.2e-299 1033.1 879 60.5
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 5.2e-298 1027.7 954 58.1
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 5.7e-297 1024.2 752 69.0
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 2.4e-295 1018.8 890 60.6
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 6.1e-291 1004.2 793 66.8
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 1.4e-290 1003.0 847 63.4
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 9.7e-289 996.9 919 59.5
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 2.2e-285 985.7 892 58.7
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 2.9e-285 985.3 780 65.9
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 9.1e-279 963.8 896 58.1
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 1.7e-253 879.8 640 68.9
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 5.1e-253 878.2 872 55.5
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 2.5e-236 822.8 921 49.2
CDE05G0341 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 6.9e-234 814.7 438 95.0
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 1.7e-232 810.1 890 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 4.9e-232 808.5 932 48.4
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 7.1e-215 751.5 909 46.4
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 9.3e-215 751.1 716 56.4
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 4.5e-209 732.3 663 59.7
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 3.8e-176 622.9 531 62.3
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 4.4e-172 609.4 442 71.5
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 1.8e-170 604.0 441 70.3
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 4.2e-167 592.8 864 41.0
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 1.8e-165 587.4 444 68.2
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 9.8e-164 581.6 412 73.5
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 1.7e-163 580.9 410 72.7
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 7.0e-162 575.5 410 72.9
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 2.1e-158 563.9 817 41.6
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 4.0e-157 559.7 411 70.3
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 6.4e-155 552.4 402 69.7
CDE05G0727 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.4e-154 551.2 280 96.8
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 1.9e-151 540.8 437 62.7
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 7.3e-151 538.9 437 62.0
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 4.0e-149 533.1 443 61.6
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.0e-145 520.8 392 65.8
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 9.5e-143 511.9 424 63.7
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 6.2e-134 482.6 435 60.5
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 1.1e-127 461.8 358 64.2
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 3.6e-118 430.3 312 67.3
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 5.4e-114 416.4 339 61.4
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 4.5e-108 396.7 420 51.4
VMungo0251G1968 Vigna mungo HOM05D003435 ORTHO05D004032 1.1e-103 382.1 318 60.7
GSVIVG01004639001 Vitis vinifera HOM05D003435 ORTHO05D004032 3.8e-75 287.3 187 78.6
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 6.7e-72 276.6 234 64.5
arahy.Tifrunner.gnm1.ann1.B7G4FR Arachis hypogaea HOM05D003435 ORTHO05D004032 3.3e-71 274.2 157 84.1
VMungo1215G2721 Vigna mungo HOM05D003435 ORTHO05D004032 4.4e-71 273.9 235 59.6
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 2.9e-67 261.2 230 60.4
SHI23026 Sapria himalayana HOM05D003435 ORTHO05D004032 2.5e-66 258.1 257 56.0
RhsimUnG0101300 Rhododendron simsii HOM05D003435 ORTHO05D004032 3.2e-66 257.7 299 47.5
GSVIVG01002593001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.5e-58 231.5 158 69.0
Hma1.2p1_0767F.1_g215490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 9.4e-58 229.6 191 59.7
CDE05G0336 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.7e-54 218.8 121 91.7
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 4.5e-44 184.1 157 61.8
Rhsim06G0113700 Rhododendron simsii HOM05D003435 ORTHO05D004032 7.3e-42 176.8 128 67.2
VMungo0251G2917 Vigna mungo HOM05D003435 ORTHO05D004032 1.2e-41 176.0 146 61.6
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 1.6e-41 175.6 172 54.7
Hma1.2p1_0979F.1_g243630 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 2.5e-34 151.8 95 70.5
Hma1.2p1_1179F.1_g264490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 2.5e-34 151.8 95 70.5
arahy.Tifrunner.gnm1.ann1.ZBDE9H Arachis hypogaea HOM05D003435 ORTHO05D004032 8.0e-33 146.7 107 66.4
Hund13567 Selenicereus undatus HOM05D003435 ORTHO05D004032 3.7e-30 137.9 107 59.8
Actinidia02767 Actinidia chinensis HOM05D003435 ORTHO05D004032 1.5e-26 125.9 75 85.3
Psat4g095840 Pisum sativum HOM05D003435 ORTHO05D020975 3.1e-24 118.2 141 48.9
Psat5g056680 Pisum sativum HOM05D003435 ORTHO05D023081 1.2e-20 106.3 106 53.8
COL.COLO4_18252 Corchorus olitorius HOM05D003435 ORTHO05D004032 1.0e-19 103.2 159 40.9
Rhsim03G0142800 Rhododendron simsii HOM05D003435 ORTHO05D004032 1.0e-19 103.2 151 42.4
BcaB02g09979 Brassica carinata HOM05D003435 ORTHO05D004032 1.3e-19 102.8 76 65.8
Psat7g159960 Pisum sativum HOM05D003635 ORTHO05D004283 1.1e-18 99.8 146 47.3
Psat5g173200 Pisum sativum HOM05D000518 ORTHO05D000737 9.5e-18 96.7 104 52.9
Psat5g173160 Pisum sativum HOM05D003435 ORTHO05D020975 2.1e-17 95.5 102 53.9
Psat6g176120 Pisum sativum HOM05D003435 ORTHO05D004032 3.6e-17 94.7 136 47.1
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 4.0e-16 91.3 142 43.7
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 8.9e-16 90.1 146 43.2
HPP92_006267 Vanilla planifolia HOM05D003435 ORTHO05D004032 5.4e-13 80.9 155 32.9
Gohir.A11G190351 Gossypium hirsutum HOM05D003435 ORTHO05D004032 4.3e-10 71.2 67 50.7
Hma1.2p1_1744F.1_g300230 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 1.6e-09 69.3 162 32.1
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.4e-07 61.6 122 36.9
Pp3c11_22390 Physcomitrium patens HOM05D000091 ORTHO05D004032 4.4e-07 61.2 102 38.2
QL06p042317 Quercus lobata HOM05D003435 ORTHO05D004032 9.9e-07 60.1 41 68.3
Pp3c7_4380 Physcomitrium patens HOM05D000091 ORTHO05D004032 1.7e-06 59.3 77 41.6
VMungo1215G0393 Vigna mungo HOM05D003435 ORTHO05D004032 4.9e-06 57.8 41 61.0
Cre08.g366150 Chlamydomonas reinhardtii HOM05D003435 ORTHO05D004032 6.4e-06 57.4 304 23.0


User provided reference genes

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