Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 6.7e-66 253.8 124 100.0
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 1.1e-36 156.8 92 80.4
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 4.7e-27 124.8 71 84.5
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.4e-26 123.2 113 58.4
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 6.7e-26 120.9 93 67.7
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 8.8e-26 120.6 96 60.4
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 8.8e-26 120.6 96 60.4
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 8.8e-26 120.6 96 60.4
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 5.7e-25 117.9 96 59.4
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 5.7e-25 117.9 96 59.4
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 9.7e-25 117.1 92 62.0
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 9.7e-25 117.1 92 62.0
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 9.7e-25 117.1 92 62.0
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 9.7e-25 117.1 96 59.4
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 1.7e-24 116.3 92 62.0
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 1.7e-24 116.3 92 62.0
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.7e-24 116.3 92 62.0
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 4.8e-24 114.8 93 60.2
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 3.1e-23 112.1 92 60.9
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 3.1e-23 112.1 92 60.9
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 1.2e-22 110.2 90 58.9
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 2.7e-22 109.0 86 62.8
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.0e-21 107.1 91 56.0
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 1.0e-21 107.1 85 62.4
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 5.0e-21 104.8 79 65.8
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 5.0e-21 104.8 69 78.3
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 5.0e-21 104.8 65 76.9
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 6.5e-21 104.4 82 63.4
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 1.6e-19 99.8 79 57.0
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 8.0e-19 97.4 72 69.4
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 1.0e-18 97.1 87 55.2
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 2.3e-18 95.9 71 69.0
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.3e-18 95.9 71 67.6
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.3e-18 95.9 71 69.0
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 2.3e-18 95.9 71 69.0
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 3.0e-18 95.5 52 84.6
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 3.0e-18 95.5 71 69.0
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 4.0e-18 95.1 71 67.6
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 5.2e-18 94.7 76 59.2
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 6.8e-18 94.4 72 66.7
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 1.5e-17 93.2 52 82.7
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 2.0e-17 92.8 71 63.4
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 3.4e-17 92.0 71 62.0
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 4.4e-17 91.7 57 77.2
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 9.8e-17 90.5 69 66.7
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 1.3e-16 90.1 49 85.7
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 4.8e-16 88.2 49 83.7
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 8.3e-16 87.4 65 66.2
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.8e-15 86.3 69 58.0
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 2.4e-15 85.9 50 80.0
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 4.1e-15 85.1 75 57.3
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 1.6e-14 83.2 50 78.0
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 3.5e-14 82.0 49 79.6
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 7.7e-14 80.9 50 74.0
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 6.5e-13 77.8 61 63.9
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 9.4e-12 73.9 52 65.4
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 9.4e-12 73.9 60 60.0
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 1.6e-11 73.2 58 62.1
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 1.6e-11 73.2 50 72.0
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 4.7e-11 71.6 60 56.7
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 1.8e-10 69.7 56 62.5
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 3.0e-10 68.9 54 63.0
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 4.0e-10 68.6 57 59.6
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 5.2e-10 68.2 47 70.2
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 6.8e-10 67.8 44 72.7
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 8.8e-10 67.4 56 60.7
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 8.8e-10 67.4 55 63.6
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.5e-09 66.6 50 66.0
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 1.5e-09 66.6 51 64.7
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 3.4e-09 65.5 50 66.0
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 4.4e-09 65.1 50 66.0
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 7.5e-09 64.3 51 62.7
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 7.5e-09 64.3 51 64.7
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 7.5e-09 64.3 55 56.4
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 7.5e-09 64.3 51 64.7
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 1.3e-08 63.5 50 62.0
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 2.2e-08 62.8 50 62.0
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 2.2e-08 62.8 50 62.0
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 2.2e-08 62.8 51 62.7
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 2.2e-08 62.8 49 63.3
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 2.8e-08 62.4 49 63.3
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 2.8e-08 62.4 48 64.6
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 2.8e-08 62.4 50 62.0
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 3.7e-08 62.0 51 58.8
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 8.3e-08 60.8 49 61.2
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 1.1e-07 60.5 49 65.3
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 4.1e-07 58.5 49 59.2
PGR004G0661 Punica granatum HOM05D002737 ORTHO05D009499 4.1e-07 58.5 74 32.4
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 5.4e-07 58.2 51 56.9
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 5.4e-07 58.2 49 61.2
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 5.4e-07 58.2 49 61.2
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.2e-06 57.0 52 50.0
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.6e-06 56.6 49 57.1
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 2.0e-06 56.2 49 59.2
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 3.5e-06 55.5 46 58.7


User provided reference genes

Program Settings