Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.6e-158 562.0 279 100.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.9e-82 308.9 261 64.0
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 1.1e-81 307.4 246 67.5
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.5e-81 307.0 259 65.6
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.5e-81 307.0 250 65.6
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.5e-81 306.2 256 65.2
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.3e-81 305.8 261 64.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 4.3e-81 305.4 246 67.5
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 5.7e-81 305.1 261 63.2
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 7.4e-81 304.7 255 64.3
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 7.4e-81 304.7 245 68.6
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.3e-80 303.9 263 63.5
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.3e-80 303.9 262 64.9
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.6e-80 303.5 261 64.4
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.2e-80 303.1 259 64.5
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.8e-80 302.8 261 64.0
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 2.8e-80 302.8 270 61.9
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.8e-80 302.8 261 63.6
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 2.8e-80 302.8 263 63.1
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.7e-80 302.4 250 65.2
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 3.7e-80 302.4 250 65.2
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 4.8e-80 302.0 254 66.1
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.8e-80 302.0 245 66.9
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 4.8e-80 302.0 246 67.1
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 6.3e-80 301.6 262 63.0
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 6.3e-80 301.6 246 66.7
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 8.2e-80 301.2 261 64.0
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 1.1e-79 300.8 245 66.5
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.4e-79 300.4 262 61.8
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.4e-79 300.4 246 67.5
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.8e-79 300.1 263 62.7
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.4e-79 299.7 245 66.5
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 4.1e-79 298.9 255 63.5
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 5.3e-79 298.5 263 62.4
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 9.1e-79 297.7 246 64.6
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.5e-78 297.0 262 62.2
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 2.0e-78 296.6 246 65.0
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.0e-78 296.6 263 62.0
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 2.0e-78 296.6 246 65.4
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.6e-78 296.2 255 63.9
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.6e-78 296.2 261 62.1
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 3.4e-78 295.8 246 66.3
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.4e-78 295.8 261 63.2
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.3e-77 293.9 261 62.5
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.3e-77 293.9 261 62.5
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.7e-77 293.5 261 62.5
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.7e-77 293.5 261 62.5
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.2e-77 293.1 246 65.0
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.9e-77 292.7 252 63.5
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.9e-77 292.7 260 62.3
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.9e-77 292.7 246 64.6
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.5e-77 291.6 262 63.4
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 8.5e-77 291.2 241 65.6
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.1e-76 290.8 261 61.7
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.4e-76 290.4 262 60.7
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.4e-76 290.4 263 61.2
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.4e-76 290.4 260 61.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.4e-76 290.4 263 60.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.9e-76 290.0 263 61.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 2.5e-76 289.7 245 65.3
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 3.2e-76 289.3 262 60.3
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 3.2e-76 289.3 263 60.5
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.2e-76 289.3 259 61.4
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 4.2e-76 288.9 243 65.4
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.2e-76 288.9 261 61.7
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 5.5e-76 288.5 246 62.6
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 5.5e-76 288.5 246 64.2
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 7.2e-76 288.1 262 60.7
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 7.2e-76 288.1 245 64.1
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 7.2e-76 288.1 255 62.0
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.6e-75 287.0 263 60.1
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.7e-75 286.2 263 60.1
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.6e-75 285.8 246 64.6
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 3.6e-75 285.8 256 60.2
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 6.1e-75 285.0 298 56.4
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.1e-75 285.0 262 59.5
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 6.1e-75 285.0 262 59.5
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 7.9e-75 284.6 246 63.4
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.3e-74 283.1 263 60.1
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.3e-74 283.1 246 63.8
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 3.0e-74 282.7 246 63.0
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 3.0e-74 282.7 244 63.9
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.9e-74 282.3 263 59.3
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 6.7e-74 281.6 262 60.3
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 6.7e-74 281.6 261 59.8
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.0e-73 280.0 260 60.4
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.6e-73 279.6 262 59.5
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.3e-73 279.3 264 58.7
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.4e-73 278.9 264 58.7
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 5.7e-73 278.5 264 58.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 7.4e-73 278.1 253 60.1
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.7e-72 276.9 197 72.1
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.2e-72 276.6 252 61.9
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 4.8e-72 275.4 260 60.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.8e-72 275.4 271 58.3
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.8e-72 275.4 271 58.3
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 6.3e-72 275.0 264 58.3
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 8.2e-72 274.6 259 59.1
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 3.1e-71 272.7 262 59.2
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 3.1e-71 272.7 262 59.2
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 6.9e-71 271.6 264 58.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.0e-69 267.7 264 56.8
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.0e-69 267.7 264 56.8
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.9e-69 266.2 291 54.3
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.0e-69 265.4 291 54.0
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 9.1e-63 244.6 260 55.4
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.5e-62 242.3 262 54.6
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.7e-61 240.4 259 54.8
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.1e-60 237.7 263 54.4
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 5.5e-60 235.3 264 52.3
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.5e-57 227.3 247 54.7
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.5e-57 227.3 247 54.7
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.3e-56 224.2 254 49.2
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 2.7e-54 216.5 245 48.2
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 3.6e-51 206.1 197 55.3
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 3.0e-50 203.0 166 66.3
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.0e-49 200.3 284 45.4
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.4e-47 193.4 211 55.5
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 3.5e-46 189.5 254 42.9
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 7.7e-46 188.3 173 63.6
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 3.8e-45 186.0 175 60.6
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 3.6e-43 179.5 146 68.5
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 1.8e-42 177.2 243 45.7
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.1e-36 157.9 201 44.3
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 2.8e-35 153.3 200 42.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 4.7e-35 152.5 104 77.9
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 9.8e-33 144.8 198 46.0
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.4e-32 142.1 134 57.5
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.3e-32 141.7 134 57.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.9e-29 132.9 122 58.2
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.8e-26 124.0 203 38.9
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.2e-25 121.3 272 32.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.7e-21 107.5 58 84.5
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 6.6e-21 105.5 179 37.4
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.5e-20 103.6 227 33.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 3.3e-20 103.2 58 82.8
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 8.1e-19 98.6 68 75.0
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.1e-18 96.7 196 36.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 6.2e-11 72.4 49 71.4
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 6.8e-10 68.9 42 83.3
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 3.2e-07 60.1 50 56.0


User provided reference genes

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