Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0183 Ceratophyllum demersum HOM05D000127 ORTHO05D005284 2.1e-100 369.0 186 100.0
CDE05G2738 Ceratophyllum demersum HOM05D000127 ORTHO05D005284 1.7e-49 199.9 278 47.8
Nitab4.5_0000087g0080 Nicotiana tabacum HOM05D000127 ORTHO05D005284 2.5e-16 89.7 195 32.3
TAR633G0159 Trochodendron aralioides HOM05D000127 ORTHO05D005284 2.1e-15 86.7 260 28.5
Nn2g15285 Nelumbo nucifera HOM05D000127 ORTHO05D005284 3.6e-15 85.9 266 27.4
Nn7g36247 Nelumbo nucifera HOM05D000127 ORTHO05D005284 6.1e-15 85.1 262 27.5
Potri.001G264600 Populus trichocarpa HOM05D000127 ORTHO05D005284 6.1e-15 85.1 263 28.5
Potri.009G059400 Populus trichocarpa HOM05D000127 ORTHO05D005284 3.1e-14 82.8 249 26.9
Rhsim07G0056800 Rhododendron simsii HOM05D000127 ORTHO05D005284 3.1e-14 82.8 267 28.8
RhsimUnG0144300 Rhododendron simsii HOM05D000127 ORTHO05D005284 3.1e-14 82.8 267 28.8
Ca_27924_v3 Cicer arietinum L. HOM05D000127 ORTHO05D005284 5.2e-14 82.0 257 26.8
Atru.chr11.2604 Acer truncatum HOM05D000127 ORTHO05D005284 1.5e-13 80.5 103 38.8
Ca_19576_v3 Cicer arietinum L. HOM05D000127 ORTHO05D005284 1.5e-13 80.5 258 26.4
vmacro13682 Vaccinium macrocarpon HOM05D000127 ORTHO05D005284 1.5e-13 80.5 259 28.6
Gohir.A08G054600 Gossypium hirsutum HOM05D000127 ORTHO05D005284 3.4e-13 79.3 267 27.3
Manes.10G140500 Manihot esculenta HOM05D000127 ORTHO05D005284 3.4e-13 79.3 263 25.1
Sc10g0000170 Simmondsia chinensis HOM05D000127 ORTHO05D005284 3.4e-13 79.3 93 47.3
Cfa010793 Carpinus fangiana HOM05D000127 ORTHO05D005284 4.4e-13 79.0 265 24.5
EL10Ac3g07469 Beta vulgaris HOM05D000127 ORTHO05D005284 1.3e-12 77.4 266 26.3
CANSAT80G2634 Cannabis sativa HOM05D000127 ORTHO05D005284 1.3e-12 77.4 259 26.3
Haze_03178 Corylus avellana HOM05D000127 ORTHO05D005284 1.7e-12 77.0 265 24.5
Gohir.D08G064300 Gossypium hirsutum HOM05D000127 ORTHO05D005284 1.7e-12 77.0 267 27.7
Gorai.004G066600 Gossypium raimondii HOM05D000127 ORTHO05D005284 2.2e-12 76.6 267 27.3
Psat0s825g0120 Pisum sativum HOM05D000127 ORTHO05D005284 2.9e-12 76.3 259 26.3
ATR0693G131 Amborella trichopoda HOM05D000127 ORTHO05D000243 6.4e-12 75.1 94 43.6
GSVIVG01007481001 Vitis vinifera HOM05D000127 ORTHO05D005284 6.4e-12 75.1 250 27.6
Lj3g0016710 Lotus japonicus HOM05D000127 ORTHO05D005284 8.3e-12 74.7 255 25.9
MBI02_g23149_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D005284 1.1e-11 74.3 83 48.2
Glyma.09G228400 Glycine max HOM05D000127 ORTHO05D005284 1.4e-11 73.9 258 25.6
Cpa.g.sc125.21 Carica papaya HOM05D000127 ORTHO05D005284 2.4e-11 73.2 177 30.5
CsaV3_7G030930 Cucumis sativus L. HOM05D000127 ORTHO05D005284 2.4e-11 73.2 261 24.1
SHI04070 Sapria himalayana HOM05D000127 ORTHO05D005284 3.2e-11 72.8 256 26.2
VMungo1127G0344 Vigna mungo HOM05D000127 ORTHO05D005284 3.2e-11 72.8 258 26.4
Lsat_1_v5_gn_1_106321 Lactuca sativa HOM05D000127 ORTHO05D005284 5.4e-11 72.0 103 40.8
Ah.04g149310 Amaranthus hybridus HOM05D000127 ORTHO05D005284 7.0e-11 71.6 114 34.2
Glyma.12G008100 Glycine max HOM05D000127 ORTHO05D005284 7.0e-11 71.6 264 24.6
Hma1.2p1_0495F.1_g165630 Hydrangea macrophylla HOM05D000127 ORTHO05D005284 7.0e-11 71.6 107 41.1
PGR031G0675 Punica granatum HOM05D000127 ORTHO05D005284 7.0e-11 71.6 253 24.9
ClCG09G004030 Citrullus lanatus HOM05D000127 ORTHO05D005284 9.2e-11 71.2 261 24.9
ECA248G0887 Erigeron canadensis HOM05D000127 ORTHO05D005284 9.2e-11 71.2 105 41.9
Prupe.2G016700 Prunus persica HOM05D000127 ORTHO05D005284 1.2e-10 70.9 257 26.5
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.6e-10 70.5 87 43.7
Ciclev10033424m.g Citrus clementina HOM05D000127 ORTHO05D005284 1.6e-10 70.5 256 24.2
MD02G1308800 Malus domestica HOM05D000127 ORTHO05D005284 2.0e-10 70.1 259 25.9
Phvul.011G010200 Phaseolus vulgaris HOM05D000127 ORTHO05D005284 2.0e-10 70.1 262 24.8
GSVIVG01007482001 Vitis vinifera HOM05D000127 ORTHO05D005284 2.0e-10 70.1 92 43.5
Psat0s2770g0040 Pisum sativum HOM05D000127 ORTHO05D005284 2.7e-10 69.7 260 24.6
Sabra09G0043800 Salix brachista HOM05D000127 ORTHO05D005284 2.7e-10 69.7 96 41.7
Lalb_Chr20g0107941 Lupinus albus HOM05D000127 ORTHO05D005284 3.5e-10 69.3 109 37.6
MD07G1013200 Malus domestica HOM05D000127 ORTHO05D005284 3.5e-10 69.3 257 25.7
Dinv43428 Davidia involucrata HOM05D000127 ORTHO05D005284 6.0e-10 68.6 107 37.4
Thecc.01G409100 Theobroma cacao HOM05D000127 ORTHO05D005284 6.0e-10 68.6 107 37.4
FAN06G0679 Fragaria x ananassa HOM05D000127 ORTHO05D005284 7.8e-10 68.2 257 25.3
HPP92_004411 Vanilla planifolia HOM05D000127 ORTHO05D005284 7.8e-10 68.2 265 24.5
FAN03G1498 Fragaria x ananassa HOM05D000127 ORTHO05D005284 1.0e-09 67.8 256 25.4
Lj3g0027315 Lotus japonicus HOM05D000127 ORTHO05D005284 1.0e-09 67.8 255 25.5
AUR62023078 Chenopodium quinoa HOM05D000127 ORTHO05D005284 1.3e-09 67.4 91 41.8
AUR62043478 Chenopodium quinoa HOM05D000127 ORTHO05D005284 1.3e-09 67.4 91 41.8
FvH4_7g01210 Fragaria vesca HOM05D000127 ORTHO05D005284 1.3e-09 67.4 257 25.3
Sed0002074 Sechium edule HOM05D000127 ORTHO05D005284 1.7e-09 67.0 261 23.0
AUR62018573 Chenopodium quinoa HOM05D000127 ORTHO05D005284 2.3e-09 66.6 89 40.4
AUR62026010 Chenopodium quinoa HOM05D000127 ORTHO05D005284 2.3e-09 66.6 89 40.4
DCAR_022383 Daucus carota HOM05D000127 ORTHO05D005284 2.3e-09 66.6 90 37.8
Gohir.A08G028400 Gossypium hirsutum HOM05D000127 ORTHO05D005284 2.3e-09 66.6 262 25.6
Medtr4g037755 Medicago truncatula HOM05D000127 ORTHO05D005284 3.0e-09 66.2 261 24.9
RcHm_v2.0_Chr1g0316681 Rosa chinensis HOM05D000127 ORTHO05D005284 3.9e-09 65.9 262 24.0
Sc14g0005030 Simmondsia chinensis HOM05D000127 ORTHO05D005284 3.9e-09 65.9 90 41.1
FAN01G2096 Fragaria x ananassa HOM05D000127 ORTHO05D005284 5.0e-09 65.5 257 25.3
HanXRQChr10g0304321 Helianthus annuus HOM05D000127 ORTHO05D005284 5.0e-09 65.5 88 43.2
Lj7A576T80 Lonicera japonica HOM05D000127 ORTHO05D005284 5.0e-09 65.5 90 43.3
arahy.Tifrunner.gnm1.ann1.0UNN3I Arachis hypogaea HOM05D000127 ORTHO05D005284 6.6e-09 65.1 261 24.1
arahy.Tifrunner.gnm1.ann1.PB961X Arachis hypogaea HOM05D000127 ORTHO05D005284 6.6e-09 65.1 261 24.1
Haze_25181 Corylus avellana HOM05D000127 ORTHO05D000243 6.6e-09 65.1 193 27.5
BcaB03g16228 Brassica carinata HOM05D000127 ORTHO05D000243 8.6e-09 64.7 266 24.4
BcaC06g33380 Brassica carinata HOM05D000127 ORTHO05D005284 8.6e-09 64.7 94 38.3
C07p46770 Brassica napus HOM05D000127 ORTHO05D005284 8.6e-09 64.7 94 38.3
BolC7t45195H Brassica oleracea HOM05D000127 ORTHO05D005284 8.6e-09 64.7 94 38.3
A07p06020 Brassica napus HOM05D000127 ORTHO05D000243 1.1e-08 64.3 266 24.1
BraA07t28390Z Brassica rapa HOM05D000127 ORTHO05D000243 1.1e-08 64.3 266 24.1
Lj7C576T13 Lonicera japonica HOM05D000127 ORTHO05D005284 1.1e-08 64.3 90 43.3
AT3G52080 Arabidopsis thaliana HOM05D000127 ORTHO05D005284 1.5e-08 63.9 94 37.2
arahy.Tifrunner.gnm1.ann1.50N8WQ Arachis hypogaea HOM05D000127 ORTHO05D005284 1.5e-08 63.9 262 24.0
arahy.Tifrunner.gnm1.ann1.PAD7M8 Arachis hypogaea HOM05D000127 ORTHO05D005284 1.9e-08 63.5 261 23.8
Thhalv10010133m.g Eutrema salsugineum HOM05D000127 ORTHO05D005284 1.9e-08 63.5 94 37.2
Medtr3g031030 Medicago truncatula HOM05D000127 ORTHO05D005284 1.9e-08 63.5 90 44.4
AL5G32630 Arabidopsis lyrata HOM05D000127 ORTHO05D005284 2.5e-08 63.2 94 37.2
BcaC02g09284 Brassica carinata HOM05D000127 ORTHO05D005284 2.5e-08 63.2 94 37.2
A04p07290 Brassica napus HOM05D000127 ORTHO05D005284 2.5e-08 63.2 94 37.2
C04p40900 Brassica napus HOM05D000127 ORTHO05D005284 2.5e-08 63.2 94 37.2
BolC4t25675H Brassica oleracea HOM05D000127 ORTHO05D005284 2.5e-08 63.2 94 37.2
BraA04t16425Z Brassica rapa HOM05D000127 ORTHO05D005284 2.5e-08 63.2 94 37.2
Sp5g10220 Schrenkiella parvula HOM05D000127 ORTHO05D005284 2.5e-08 63.2 94 37.2
SGA_v2.0_scaffold90G27644 Striga asiatica HOM05D000127 ORTHO05D005284 2.5e-08 63.2 90 38.9
unitig_748.g7517 Utricularia gibba HOM05D000127 ORTHO05D005284 2.5e-08 63.2 90 41.1
BcaB02g11527 Brassica carinata HOM05D000127 ORTHO05D000243 3.3e-08 62.8 279 24.4
BcaC04g23078 Brassica carinata HOM05D000127 ORTHO05D000243 3.3e-08 62.8 266 24.1
C09p12370 Brassica napus HOM05D000230 ORTHO05D000176 3.3e-08 62.8 266 24.1
BolC9t54130H Brassica oleracea HOM05D000127 ORTHO05D000243 3.3e-08 62.8 266 24.1
Carub.0005s1840 Capsella rubella HOM05D000127 ORTHO05D005284 3.3e-08 62.8 94 37.2
Dinv09342 Davidia involucrata HOM05D000127 ORTHO05D005284 3.3e-08 62.8 89 41.6
Lalb_Chr25g0282941 Lupinus albus HOM05D000127 ORTHO05D005284 3.3e-08 62.8 109 37.6
BcaB02g08591 Brassica carinata HOM05D000127 ORTHO05D005284 4.3e-08 62.4 94 37.2
A09p10430 Brassica napus HOM05D000230 ORTHO05D000176 4.3e-08 62.4 266 23.7
BraA09t36688Z Brassica rapa HOM05D000127 ORTHO05D000243 4.3e-08 62.4 266 23.7
CARHR161790 Cardamine hirsuta HOM05D000127 ORTHO05D005284 5.6e-08 62.0 94 36.2
Cpa.g.sc85.110 Carica papaya HOM05D000127 ORTHO05D005284 5.6e-08 62.0 94 39.4
Peaxi162Scf00071g01144 Petunia axillaris HOM05D000127 ORTHO05D005284 5.6e-08 62.0 90 41.1
QL03p017212 Quercus lobata HOM05D000127 ORTHO05D000792 5.6e-08 62.0 107 33.6
Sp3g27020 Schrenkiella parvula HOM05D000127 ORTHO05D000243 5.6e-08 62.0 274 23.7
TWI09G0040 Tripterygium wilfordii HOM05D000127 ORTHO05D005284 5.6e-08 62.0 262 25.2
A03p48660 Brassica napus HOM05D000127 ORTHO05D005284 7.3e-08 61.6 94 37.2
BraA03t13969Z Brassica rapa HOM05D000127 ORTHO05D005284 7.3e-08 61.6 94 37.2
THA.LOC104801975 Tarenaya hassleriana HOM05D000127 ORTHO05D005284 7.3e-08 61.6 104 36.5
C07p09180 Brassica napus HOM05D000127 ORTHO05D000243 9.5e-08 61.2 266 25.2
BolC7t41330H Brassica oleracea HOM05D000127 ORTHO05D000243 9.5e-08 61.2 266 25.2
AUR62020843 Chenopodium quinoa HOM05D000127 ORTHO05D005284 9.5e-08 61.2 90 37.8
Cc02_g28140 Coffea canephora HOM05D000127 ORTHO05D005284 9.5e-08 61.2 90 40.0
Duzib138G0672 Durio zibethinus HOM05D000127 ORTHO05D005284 9.5e-08 61.2 90 38.9
BcaC06g35995 Brassica carinata HOM05D000127 ORTHO05D000243 1.6e-07 60.5 266 23.7
Nitab4.5_0005680g0030 Nicotiana tabacum HOM05D000127 ORTHO05D005284 1.6e-07 60.5 115 34.8
Oeu036345.1 Olea europaea HOM05D000127 ORTHO05D005284 1.6e-07 60.5 90 35.6
GSVIVG01032132001 Vitis vinifera HOM05D000127 ORTHO05D005284 1.6e-07 60.5 92 38.0
PSO782G5209 Papaver somniferum HOM05D000127 ORTHO05D005284 2.1e-07 60.1 90 41.1
Aa31LG10G7150 Aethionema arabicum HOM05D000127 ORTHO05D005284 2.8e-07 59.7 90 37.8
ATR0124G020 Amborella trichopoda HOM05D000127 ORTHO05D005499 2.8e-07 59.7 86 40.7
QL03p017181 Quercus lobata HOM05D000127 ORTHO05D000792 2.8e-07 59.7 125 32.0
Migut.A00147 Erythranthe guttata HOM05D000127 ORTHO05D005284 3.6e-07 59.3 109 33.9
TPR.G27842 Trifolium pratense HOM05D000127 ORTHO05D005284 3.6e-07 59.3 85 41.2
CiPaw.14G001200 Carya illinoinensis HOM05D000127 ORTHO05D005284 4.7e-07 58.9 82 41.5
Thhalv10023201m.g Eutrema salsugineum HOM05D000127 ORTHO05D000243 4.7e-07 58.9 266 23.3
FAN26G1782 Fragaria x ananassa HOM05D000127 ORTHO05D000243 4.7e-07 58.9 270 24.4
PSO478G1543 Papaver somniferum HOM05D000127 ORTHO05D005284 4.7e-07 58.9 90 40.0
ATR0706G110 Amborella trichopoda HOM05D000127 ORTHO05D000243 6.2e-07 58.5 96 33.3
CAN.G38.10 Capsicum annuum HOM05D000127 ORTHO05D000792 6.2e-07 58.5 215 24.2
PSO339G5252 Papaver somniferum HOM05D000127 ORTHO05D005284 6.2e-07 58.5 94 39.4
TWI53G2140 Tripterygium wilfordii HOM05D000127 ORTHO05D005284 6.2e-07 58.5 90 37.8
CANSAT80G2399 Cannabis sativa HOM05D000127 ORTHO05D000243 8.0e-07 58.2 152 29.6
CAN.G792.70 Capsicum annuum HOM05D000127 ORTHO05D000792 1.1e-06 57.8 220 21.8
CiPaw.13G006600 Carya illinoinensis HOM05D000127 ORTHO05D005284 1.1e-06 57.8 74 43.2
MBI08_g29585_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D005499 1.1e-06 57.8 83 34.9
Sed0016504 Sechium edule HOM05D000127 ORTHO05D005284 1.1e-06 57.8 109 34.9
SEGI_36065 Sequoiadendron giganteum HOM05D000127 ORTHO05D000792 1.1e-06 57.8 268 22.4
Aa31LG8G12300 Aethionema arabicum HOM05D000127 ORTHO05D000243 1.4e-06 57.4 268 22.4
FvH4_1g24460 Fragaria vesca HOM05D000127 ORTHO05D000243 1.8e-06 57.0 270 24.1
FAN28G2958 Fragaria x ananassa HOM05D000127 ORTHO05D000243 1.8e-06 57.0 270 24.1
AT2G13620 Arabidopsis thaliana HOM05D000127 ORTHO05D000243 2.3e-06 56.6 270 23.7
Rhsim08G0077100 Rhododendron simsii HOM05D000127 ORTHO05D000243 2.3e-06 56.6 268 21.6
TWI38G0668 Tripterygium wilfordii HOM05D000127 ORTHO05D000792 2.3e-06 56.6 102 30.4
HPP92_010867 Vanilla planifolia HOM05D000127 ORTHO05D000792 2.3e-06 56.6 99 32.3
Actinidia19404 Actinidia chinensis HOM05D000127 ORTHO05D005284 3.1e-06 56.2 225 27.1
Carub.0003s2815 Capsella rubella HOM05D000127 ORTHO05D000243 3.1e-06 56.2 270 23.7
FAN19G0979 Fragaria x ananassa HOM05D000127 ORTHO05D000243 3.1e-06 56.2 270 24.1
Lalb_Chr13g0296611 Lupinus albus HOM05D000127 ORTHO05D000243 3.1e-06 56.2 275 21.1
QL04p008129 Quercus lobata HOM05D000127 ORTHO05D005284 3.1e-06 56.2 280 23.2
Glyma.13G081300 Glycine max HOM05D000127 ORTHO05D000792 4.0e-06 55.8 95 34.7
ClCG07G007440 Citrullus lanatus HOM05D000127 ORTHO05D000792 5.2e-06 55.5 105 31.4
PSO478G4485 Papaver somniferum HOM05D000127 ORTHO05D005284 5.2e-06 55.5 275 22.5
QL04p008518 Quercus lobata HOM05D000127 ORTHO05D005284 5.2e-06 55.5 280 23.2
TWI38G1845 Tripterygium wilfordii HOM05D000127 ORTHO05D000792 5.2e-06 55.5 102 30.4
Actinidia22705 Actinidia chinensis HOM05D000127 ORTHO05D013384 8.9e-06 54.7 179 26.3
AL3G45480 Arabidopsis lyrata HOM05D000127 ORTHO05D000243 8.9e-06 54.7 270 23.7
Gorai.004G037800 Gossypium raimondii HOM05D000127 ORTHO05D005284 8.9e-06 54.7 90 34.4
Lalb_Chr12g0200441 Lupinus albus HOM05D000127 ORTHO05D000792 8.9e-06 54.7 187 26.7
MBI15_g18586_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000243 8.9e-06 54.7 264 19.3
vmacro18677 Vaccinium macrocarpon HOM05D000127 ORTHO05D000243 8.9e-06 54.7 274 23.0


User provided reference genes

Program Settings