Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 7.7e-175 617.1 318 100.0
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 2.9e-89 332.8 243 68.7
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 3.3e-85 319.3 233 69.1
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 3.7e-84 315.8 248 66.1
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 4.8e-84 315.5 255 63.5
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 4.8e-84 315.5 255 63.5
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 6.2e-84 315.1 255 63.5
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.4e-83 313.9 254 63.4
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 2.4e-83 313.2 234 67.5
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 6.9e-83 311.6 240 63.8
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.5e-82 310.5 255 62.4
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 2.9e-81 306.2 246 63.8
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 3.8e-81 305.8 230 67.8
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 3.8e-81 305.8 208 71.6
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 6.5e-81 305.1 230 67.4
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 6.5e-81 305.1 231 67.5
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 8.4e-81 304.7 226 68.1
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.1e-80 304.3 240 61.7
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 1.1e-80 304.3 234 67.5
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 2.5e-80 303.1 235 63.0
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.5e-80 303.1 252 61.5
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 3.2e-80 302.8 243 63.8
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 7.1e-80 301.6 245 62.4
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.6e-79 300.4 231 67.1
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 2.1e-79 300.1 259 61.8
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.7e-79 299.7 234 64.5
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 4.6e-79 298.9 218 69.3
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 4.6e-79 298.9 229 63.8
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 6.0e-79 298.5 226 62.8
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.0e-78 296.2 226 65.5
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.1e-77 294.3 232 62.5
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.1e-77 294.3 223 65.0
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.5e-77 293.9 225 67.1
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.5e-77 293.9 225 67.1
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 1.5e-77 293.9 235 62.6
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.9e-77 293.5 229 66.4
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.9e-77 293.5 219 64.8
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 2.5e-77 293.1 245 62.9
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 4.3e-77 292.4 239 64.4
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 5.7e-77 292.0 245 60.8
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 5.7e-77 292.0 251 59.0
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 7.4e-77 291.6 235 63.8
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 9.7e-77 291.2 227 63.4
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.2e-76 290.0 227 63.0
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 3.7e-76 289.3 239 61.9
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 4.8e-76 288.9 238 59.7
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 4.8e-76 288.9 264 58.3
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 4.8e-76 288.9 212 66.0
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 4.8e-76 288.9 235 63.0
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 6.3e-76 288.5 243 60.9
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 6.3e-76 288.5 239 61.5
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.1e-75 287.7 221 65.2
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 1.8e-75 287.0 226 63.7
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 2.4e-75 286.6 242 60.3
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 6.9e-75 285.0 234 62.0
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 9.0e-75 284.6 233 62.7
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 9.0e-75 284.6 252 60.3
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.5e-74 283.9 233 62.7
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 2.6e-74 283.1 228 62.3
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 2.6e-74 283.1 244 59.8
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 2.6e-74 283.1 255 59.2
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 5.9e-74 282.0 256 61.3
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 7.7e-74 281.6 236 62.3
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.0e-73 281.2 234 62.0
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 1.3e-73 280.8 241 60.2
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.7e-73 280.4 239 59.8
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 2.2e-73 280.0 221 63.3
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 2.9e-73 279.6 245 59.2
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 2.9e-73 279.6 245 59.2
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 3.8e-73 279.3 230 61.3
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 3.8e-73 279.3 201 67.2
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 5.0e-73 278.9 229 59.8
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 5.0e-73 278.9 233 57.9
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 8.5e-73 278.1 205 67.3
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 1.4e-72 277.3 238 59.7
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 1.4e-72 277.3 246 61.4
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.9e-72 276.9 211 64.9
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 2.5e-72 276.6 237 58.2
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 1.2e-71 274.2 232 59.1
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.6e-71 273.9 224 62.5
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.6e-71 273.9 230 60.4
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 6.1e-71 271.9 193 68.9
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 7.9e-71 271.6 231 61.0
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 3.9e-70 269.2 226 60.2
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 8.8e-70 268.1 236 57.6
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 1.1e-69 267.7 225 59.1
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 2.0e-69 266.9 226 58.8
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 2.5e-69 266.5 238 57.1
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 2.5e-69 266.5 231 58.0
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 2.5e-69 266.5 235 56.6
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 3.3e-69 266.2 236 57.2
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.8e-67 260.4 210 60.0
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 3.4e-66 256.1 137 94.2
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 5.0e-65 252.3 198 63.6
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.9e-64 250.4 201 63.2
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 2.2e-60 236.9 194 59.8
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 3.1e-59 233.0 373 39.7
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 1.6e-55 220.7 241 49.8
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 3.0e-54 216.5 245 51.0
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 3.0e-54 216.5 191 60.7
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 4.4e-53 212.6 202 51.5
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 9.7e-53 211.5 226 44.7
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 7.0e-51 205.3 235 45.5
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 5.2e-46 189.1 145 64.8
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 8.0e-39 165.2 228 41.7
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 2.0e-34 150.6 135 51.9
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 2.8e-31 140.2 101 66.3
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 3.6e-31 139.8 98 67.3
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.9e-19 100.9 225 33.8
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 7.0e-19 99.0 79 63.3
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 8.6e-09 65.5 164 28.7
Gohir.D02G037800 Gossypium hirsutum HOM05D001530 ORTHO05D003676 7.3e-08 62.4 200 30.0
Gorai.005G041700 Gossypium raimondii HOM05D001530 ORTHO05D003676 7.3e-08 62.4 200 30.0
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 1.2e-07 61.6 229 27.1
MD03G1267800 Malus domestica HOM05D001530 ORTHO05D003676 1.2e-07 61.6 200 30.5
FAN27G3491 Fragaria x ananassa HOM05D001530 ORTHO05D003676 2.8e-07 60.5 200 30.0
Gohir.A02G030900 Gossypium hirsutum HOM05D001530 ORTHO05D003676 2.8e-07 60.5 229 26.6
HanXRQChr14g0428851 Helianthus annuus HOM05D001530 ORTHO05D003676 2.8e-07 60.5 230 24.8
FAN20G0938 Fragaria x ananassa HOM05D001530 ORTHO05D003676 3.6e-07 60.1 212 29.7
FvH4_2g23830 Fragaria vesca HOM05D001530 ORTHO05D003676 4.7e-07 59.7 200 29.5
FAN24G2525 Fragaria x ananassa HOM05D001530 ORTHO05D003676 4.7e-07 59.7 200 29.5
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 6.2e-07 59.3 200 29.5
RcHm_v2.0_Chr6g0291411 Rosa chinensis HOM05D001530 ORTHO05D003676 6.2e-07 59.3 200 29.5
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 8.1e-07 58.9 228 27.2
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 8.1e-07 58.9 190 26.8
SalBow5G1389 Salvia bowleyana HOM05D001530 ORTHO05D003676 8.1e-07 58.9 208 27.4
SalBow5G5470 Salvia bowleyana HOM05D001530 ORTHO05D003676 8.1e-07 58.9 208 27.4
CSS0047387 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D003676 1.1e-06 58.5 200 28.0
Sc17g0004010 Simmondsia chinensis HOM05D001530 ORTHO05D003676 1.1e-06 58.5 202 28.2
TWI53G1969 Tripterygium wilfordii HOM05D001530 ORTHO05D003676 1.1e-06 58.5 200 28.5
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 1.4e-06 58.2 223 26.5
CARHR229880 Cardamine hirsuta HOM05D001082 ORTHO05D001538 1.8e-06 57.8 158 27.8
TWI09G0979 Tripterygium wilfordii HOM05D001530 ORTHO05D003676 1.8e-06 57.8 218 28.4
COL.COLO4_21647 Corchorus olitorius HOM05D001530 ORTHO05D003676 3.1e-06 57.0 225 25.8
Pp3c1_7390 Physcomitrium patens HOM05D001530 ORTHO05D003676 3.1e-06 57.0 239 24.3
Potri.010G030800 Populus trichocarpa HOM05D001530 ORTHO05D003676 3.1e-06 57.0 200 28.0
Sed0026563 Sechium edule HOM05D001530 ORTHO05D003676 4.0e-06 56.6 194 28.4
THA.LOC104801224 Tarenaya hassleriana HOM05D001530 ORTHO05D003676 4.0e-06 56.6 211 27.0
MELO3C021403.2 Cucumis melo HOM05D001530 ORTHO05D003676 5.2e-06 56.2 195 28.2
CsaV3_6G018580 Cucumis sativus L. HOM05D001530 ORTHO05D003676 5.2e-06 56.2 195 28.2
GSVIVG01011108001 Vitis vinifera HOM05D001530 ORTHO05D003676 5.2e-06 56.2 200 28.5
Gohir.D09G053600 Gossypium hirsutum HOM05D001530 ORTHO05D003676 6.8e-06 55.8 200 27.5
Gorai.006G053600 Gossypium raimondii HOM05D001530 ORTHO05D003676 6.8e-06 55.8 200 27.5
Thecc.01G374200 Theobroma cacao HOM05D001082 ORTHO05D001538 6.8e-06 55.8 223 22.9
Gohir.A09G054600 Gossypium hirsutum HOM05D001530 ORTHO05D003676 8.9e-06 55.5 200 27.0
MD13G1183100 Malus domestica HOM05D001530 ORTHO05D003676 8.9e-06 55.5 217 27.6


User provided reference genes

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