Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.3e-63 245.4 118 100.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 3.7e-58 228.0 118 92.4
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.3e-46 188.0 120 77.5
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.3e-46 188.0 120 77.5
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 7.3e-46 187.2 110 78.2
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 6.2e-45 184.1 119 75.6
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.4e-44 183.0 113 73.5
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 2.3e-44 182.2 113 77.0
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.2e-43 179.9 119 73.9
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.5e-43 179.5 118 74.6
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.5e-43 179.5 117 72.6
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.0e-43 179.1 118 72.9
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 3.4e-43 178.3 118 75.4
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 5.8e-43 177.6 112 73.2
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 5.8e-43 177.6 107 73.8
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 7.5e-43 177.2 104 77.9
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.5e-43 177.2 112 73.2
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 9.8e-43 176.8 108 75.9
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 9.8e-43 176.8 114 73.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.2e-42 175.6 120 72.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 3.7e-42 174.9 114 71.9
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 3.7e-42 174.9 118 71.2
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 6.4e-42 174.1 112 74.1
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 8.3e-42 173.7 115 72.2
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.9e-41 172.6 112 71.4
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.9e-41 172.6 105 76.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.9e-41 172.6 107 74.8
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.4e-41 172.2 118 70.3
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 2.4e-41 172.2 115 70.4
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.4e-41 172.2 118 68.6
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 4.1e-41 171.4 97 82.5
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 5.4e-41 171.0 114 69.3
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.6e-40 169.5 100 76.0
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 2.1e-40 169.1 110 72.7
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 2.7e-40 168.7 101 77.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.5e-40 168.3 105 75.2
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 3.5e-40 168.3 120 67.5
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 3.5e-40 168.3 113 68.1
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 4.6e-40 167.9 99 75.8
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 7.8e-40 167.2 115 68.7
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 7.8e-40 167.2 105 75.2
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 7.8e-40 167.2 113 68.1
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.0e-39 166.8 112 67.9
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.0e-39 166.8 119 67.2
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.3e-39 166.4 119 66.4
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.3e-39 166.4 111 69.4
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 2.3e-39 165.6 115 67.8
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.0e-39 165.2 110 70.0
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 3.9e-39 164.9 105 75.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 3.9e-39 164.9 110 68.2
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 8.6e-39 163.7 101 75.2
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 8.6e-39 163.7 109 71.6
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.6e-39 163.7 104 73.1
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 8.6e-39 163.7 113 67.3
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.1e-38 163.3 105 72.4
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.5e-38 162.9 105 72.4
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.5e-38 162.9 105 72.4
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.9e-38 162.5 105 75.2
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.5e-38 162.2 110 68.2
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.5e-38 162.2 108 68.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 4.3e-38 161.4 105 71.4
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 4.3e-38 161.4 114 64.9
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 5.6e-38 161.0 98 76.5
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 7.3e-38 160.6 110 69.1
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.3e-38 160.6 97 76.3
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.3e-38 160.6 98 76.5
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 7.3e-38 160.6 115 69.6
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 9.5e-38 160.2 100 75.0
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.2e-37 159.8 118 66.1
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.2e-37 159.8 118 65.3
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.6e-37 159.5 114 69.3
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.1e-37 159.1 106 69.8
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.1e-37 159.1 108 68.5
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 2.8e-37 158.7 97 77.3
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.8e-37 158.7 93 78.5
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 2.8e-37 158.7 100 74.0
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 2.8e-37 158.7 100 74.0
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 3.6e-37 158.3 114 66.7
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.6e-37 158.3 98 75.5
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.6e-37 158.3 99 72.7
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.7e-37 157.9 110 67.3
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 4.7e-37 157.9 93 78.5
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.1e-36 156.8 105 72.4
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.1e-36 156.8 118 65.3
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.4e-36 156.4 118 64.4
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.4e-36 156.4 118 65.3
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.4e-36 156.4 110 70.0
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.4e-36 156.4 105 71.4
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.8e-36 156.0 96 76.0
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.8e-36 156.0 118 64.4
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.8e-36 156.0 117 65.0
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 3.1e-36 155.2 98 74.5
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.1e-36 155.2 104 70.2
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 4.0e-36 154.8 102 72.5
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-36 154.5 106 71.7
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.2e-36 154.5 106 71.7
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.2e-36 154.5 106 66.0
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 6.8e-36 154.1 114 63.2
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 6.8e-36 154.1 114 63.2
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 6.8e-36 154.1 114 63.2
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 6.8e-36 154.1 114 63.2
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 8.9e-36 153.7 115 67.8
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 8.9e-36 153.7 106 67.9
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 8.9e-36 153.7 101 72.3
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.2e-35 153.3 111 64.0
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.2e-35 153.3 106 70.8
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 113 61.9
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-35 152.9 106 67.9
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 1.5e-35 152.9 106 67.9
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.5e-35 152.9 118 64.4
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.6e-35 152.1 118 63.6
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.6e-35 152.1 106 71.7
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.6e-35 152.1 118 63.6
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 3.4e-35 151.8 110 64.5
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 3.4e-35 151.8 106 71.7
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 4.4e-35 151.4 110 66.4
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.8e-35 151.0 91 75.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 7.6e-35 150.6 112 63.4
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 9.9e-35 150.2 118 63.6
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 9.9e-35 150.2 110 65.5
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 9.9e-35 150.2 110 64.5
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.3e-34 149.8 118 63.6
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.3e-34 149.8 118 63.6
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.7e-34 149.4 99 71.7
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 2.2e-34 149.1 101 69.3
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 2.9e-34 148.7 102 66.7
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 2.9e-34 148.7 111 64.9
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.9e-34 148.7 105 66.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 2.9e-34 148.7 86 76.7
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.9e-34 147.9 117 61.5
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.9e-34 147.9 117 61.5
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 4.9e-34 147.9 102 67.6
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 4.9e-34 147.9 118 62.7
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 8.4e-34 147.1 115 65.2
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.9e-33 146.0 97 69.1
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 3.2e-33 145.2 102 68.6
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.6e-32 142.9 78 79.5
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 3.5e-32 141.7 87 74.7
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.3e-31 139.8 118 58.5
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.6e-30 133.7 115 58.3
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 5.2e-28 127.9 100 62.0
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 1.5e-27 126.3 82 69.5
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 7.1e-25 117.5 98 56.1
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 3.5e-24 115.2 62 80.6
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 6.6e-23 110.9 103 53.4
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 2.1e-21 105.9 86 60.5
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.1e-20 103.6 70 67.1
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.4e-20 103.2 68 70.6
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.5e-19 99.8 86 53.5
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 4.5e-19 98.2 76 65.8
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 9.3e-17 90.5 51 76.5
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.3e-15 86.7 73 47.9
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 6.7e-15 84.3 70 61.4
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.4e-12 76.6 59 57.6
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 3.5e-08 62.0 49 61.2
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.0e-07 60.5 49 53.1
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.8e-07 59.7 61 54.1
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 6.7e-07 57.8 117 35.9


User provided reference genes

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