Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.5e-113 412.1 209 100.0
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.0e-87 325.1 173 94.2
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.0e-72 274.2 197 71.1
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 3.1e-71 272.3 203 70.0
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.0e-71 271.9 197 70.6
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 8.9e-71 270.8 193 70.5
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 3.4e-70 268.9 192 72.4
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 5.8e-70 268.1 200 69.5
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 5.8e-70 268.1 188 72.3
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 9.8e-70 267.3 189 73.0
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 1.3e-69 266.9 195 69.7
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.7e-69 266.5 189 72.0
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 1.7e-69 266.5 210 69.5
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.7e-69 266.5 188 72.9
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 2.2e-69 266.2 188 73.9
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.9e-69 265.8 197 68.0
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 2.9e-69 265.8 192 71.4
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 3.7e-69 265.4 189 71.4
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 4.9e-69 265.0 188 73.4
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 4.9e-69 265.0 193 71.0
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 8.3e-69 264.2 198 69.2
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 8.3e-69 264.2 201 68.7
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 8.3e-69 264.2 181 72.9
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.1e-68 263.8 184 72.3
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 1.4e-68 263.5 188 71.8
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.9e-68 263.1 191 69.1
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 4.1e-68 261.9 209 65.1
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 4.1e-68 261.9 208 65.9
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 5.4e-68 261.5 183 72.1
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 5.4e-68 261.5 188 71.3
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 5.4e-68 261.5 192 70.3
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 5.4e-68 261.5 206 66.0
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 5.4e-68 261.5 187 71.1
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 7.0e-68 261.2 191 70.7
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 9.2e-68 260.8 184 70.7
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 9.2e-68 260.8 189 68.8
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 9.2e-68 260.8 188 70.2
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 1.2e-67 260.4 184 71.2
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.2e-67 260.4 186 72.6
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.7e-67 259.2 195 68.2
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 4.6e-67 258.5 184 71.2
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 6.0e-67 258.1 189 70.4
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.8e-67 257.7 184 71.2
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.0e-66 257.3 185 71.4
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 1.3e-66 256.9 205 65.9
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 1.7e-66 256.5 189 68.3
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 2.3e-66 256.1 184 70.1
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 3.9e-66 255.4 177 70.1
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 3.9e-66 255.4 182 69.8
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 5.0e-66 255.0 184 69.6
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 6.6e-66 254.6 197 68.0
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 6.6e-66 254.6 203 66.5
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 6.6e-66 254.6 203 65.5
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 8.6e-66 254.2 184 69.6
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 8.6e-66 254.2 184 67.9
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 8.6e-66 254.2 204 66.2
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 1.5e-65 253.4 184 67.4
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.5e-65 253.4 188 67.6
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.5e-65 253.4 202 66.3
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.5e-65 253.4 202 65.3
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.9e-65 253.1 185 69.2
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 3.3e-65 252.3 208 63.9
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 4.3e-65 251.9 196 64.3
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 4.3e-65 251.9 178 71.9
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 5.6e-65 251.5 207 63.3
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 5.6e-65 251.5 199 66.3
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 7.3e-65 251.1 207 62.3
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 9.5e-65 250.8 199 63.8
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 9.5e-65 250.8 174 73.0
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 9.5e-65 250.8 182 68.7
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 9.5e-65 250.8 175 68.6
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.2e-64 250.4 192 66.1
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.2e-64 250.4 185 68.6
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.2e-64 250.4 185 68.6
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.6e-64 250.0 203 63.1
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.6e-64 250.0 187 69.5
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.6e-64 250.0 187 70.1
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.6e-64 250.0 201 63.2
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.6e-64 250.0 190 66.3
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 2.8e-64 249.2 174 69.0
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 4.7e-64 248.4 207 62.3
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 6.2e-64 248.1 185 67.6
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-63 247.3 168 71.4
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 1.8e-63 246.5 169 70.4
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 1.8e-63 246.5 169 70.4
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 2.3e-63 246.1 168 70.8
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.3e-63 246.1 194 66.0
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 2.3e-63 246.1 188 66.5
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 3.1e-63 245.7 169 70.4
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 3.1e-63 245.7 169 70.4
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 4.0e-63 245.4 169 70.4
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 4.0e-63 245.4 169 70.4
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 4.0e-63 245.4 178 69.1
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 6.8e-63 244.6 176 69.3
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 6.8e-63 244.6 169 69.8
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 6.8e-63 244.6 169 69.8
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 2.0e-62 243.0 169 69.2
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 9.8e-62 240.7 169 67.5
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 3.7e-61 238.8 169 68.6
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 3.7e-61 238.8 169 68.6
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 3.7e-61 238.8 169 68.6
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 4.9e-61 238.4 175 66.3
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 1.4e-60 236.9 184 67.9
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 7.8e-59 231.1 205 63.4
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 1.7e-58 229.9 205 62.9
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 1.5e-57 226.9 205 62.0
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 5.6e-57 224.9 181 64.6
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.2e-56 223.8 207 60.4
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 2.8e-56 222.6 207 60.9
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 2.3e-55 219.5 208 59.6
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 3.1e-55 219.2 195 59.0
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 1.5e-54 216.9 293 44.0
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 9.9e-54 214.2 167 62.9
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 7.8e-51 204.5 168 64.9
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 3.0e-50 202.6 199 55.8
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 5.1e-50 201.8 199 55.8
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 5.1e-50 201.8 199 55.8
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.1e-49 200.7 135 71.9
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 9.5e-49 197.6 286 42.7
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 2.4e-47 193.0 193 53.9
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 4.9e-45 185.3 131 70.2
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.1e-44 184.1 140 65.0
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 1.4e-44 183.7 132 71.2
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 9.2e-44 181.0 143 65.0
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 4.6e-43 178.7 120 74.2
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.0e-42 177.6 115 77.4
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.1e-39 167.5 132 65.2
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 3.4e-38 162.5 125 67.2
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 4.4e-38 162.2 125 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 1.4e-36 157.1 121 62.0
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 1.4e-36 157.1 105 64.8
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.4e-36 157.1 126 58.7
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.2e-36 156.0 107 70.1
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.2e-35 154.1 113 62.8
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 5.6e-33 145.2 100 69.0
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 9.0e-31 137.9 93 71.0
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.5e-30 137.1 91 71.4
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 3.9e-26 122.5 129 53.5
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 3.9e-26 122.5 129 53.5
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 7.1e-20 101.7 73 64.4
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 1.8e-18 97.1 90 55.6
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 5.7e-17 92.0 95 45.3
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 6.9e-15 85.1 66 62.1
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 5.8e-14 82.0 64 65.6
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.8e-13 79.3 83 47.0
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 4.6e-11 72.4 54 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 3.9e-10 69.3 46 58.7
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.1e-09 67.8 46 67.4
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 1.6e-08 63.9 59 50.8


User provided reference genes

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