Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 7.5e-206 720.3 370 100.0
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 8.7e-154 547.4 320 89.7
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 6.3e-120 434.9 314 71.3
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 5.0e-109 398.7 314 63.4
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 6.5e-109 398.3 316 65.5
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 1.1e-108 397.5 315 64.8
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.5e-108 397.1 315 66.7
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 2.5e-108 396.4 314 64.0
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 8.8e-106 387.9 315 64.1
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 4.4e-105 385.6 315 64.1
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 3.7e-104 382.5 316 61.4
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 3.7e-104 382.5 314 64.0
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 4.8e-104 382.1 315 64.1
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 8.3e-104 381.3 315 63.2
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 1.8e-103 380.2 315 63.5
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 3.1e-103 379.4 315 61.0
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 5.4e-103 378.6 315 64.4
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 1.2e-102 377.5 311 63.3
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 1.2e-102 377.5 315 61.9
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.2e-102 377.5 315 61.9
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 3.5e-102 375.9 315 62.5
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.5e-102 375.6 363 55.9
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 3.8e-101 372.5 315 61.6
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 1.5e-100 370.5 318 61.9
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.9e-100 370.2 314 62.1
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 1.2e-99 367.5 315 62.2
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 1.6e-99 367.1 315 61.3
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 4.7e-99 365.5 315 61.9
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 6.1e-99 365.2 314 58.9
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 8.0e-99 364.8 363 54.8
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.0e-98 364.4 315 60.0
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 1.8e-98 363.6 315 60.0
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 1.8e-98 363.6 315 60.3
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.8e-98 363.6 308 62.3
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.3e-98 363.2 314 58.0
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 8.8e-98 361.3 315 61.0
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 1.2e-97 360.9 315 60.3
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.2e-97 360.9 315 59.0
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 3.4e-97 359.4 315 59.4
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 5.7e-97 358.6 258 70.5
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 9.8e-97 357.8 315 59.0
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 9.8e-97 357.8 314 56.4
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 1.7e-96 357.1 314 57.6
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 2.8e-96 356.3 314 57.3
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.8e-96 356.3 315 59.7
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.8e-96 356.3 315 59.7
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 3.7e-96 355.9 314 60.5
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 4.9e-96 355.5 315 58.4
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 1.1e-95 354.4 316 58.5
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 1.1e-95 354.4 313 59.4
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.4e-95 354.0 315 59.7
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.4e-95 354.0 314 58.9
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 2.4e-95 353.2 328 57.0
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.1e-95 351.3 315 59.0
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 1.6e-94 350.5 317 58.4
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 2.0e-94 350.1 315 56.5
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 2.7e-94 349.7 314 58.0
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 4.5e-94 349.0 316 57.9
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 4.5e-94 349.0 315 59.4
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 7.7e-94 348.2 314 58.6
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 2.3e-93 346.7 313 60.1
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 5.0e-93 345.5 314 58.3
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 5.0e-93 345.5 315 59.7
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 6.6e-93 345.1 315 58.4
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.5e-92 344.0 315 58.1
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 5.6e-92 342.0 309 58.3
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 3.6e-91 339.3 314 58.3
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 6.1e-91 338.6 313 58.1
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 8.0e-91 338.2 314 57.3
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 8.0e-91 338.2 320 55.6
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 1.4e-90 337.4 314 56.4
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.8e-90 337.0 315 57.5
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 4.0e-90 335.9 310 57.7
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 4.0e-90 335.9 315 57.8
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 6.8e-90 335.1 317 56.2
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 6.8e-90 335.1 316 56.3
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 6.8e-90 335.1 315 57.1
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 8.9e-90 334.7 313 56.2
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 2.6e-89 333.2 318 55.7
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 3.7e-88 329.3 315 55.2
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 4.9e-88 328.9 316 54.7
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 2.4e-87 326.6 313 54.6
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 4.1e-87 325.9 337 52.5
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 7.0e-87 325.1 337 52.2
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.6e-86 323.9 313 55.9
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 2.0e-86 323.6 314 56.4
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 3.5e-86 322.8 322 55.3
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 3.5e-86 322.8 313 55.0
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 4.6e-86 322.4 314 54.5
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 4.6e-86 322.4 312 55.8
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 7.8e-86 321.6 312 56.1
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 7.8e-86 321.6 313 55.3
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 6.6e-85 318.5 338 52.1
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 6.6e-85 318.5 338 52.1
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 6.6e-85 318.5 338 52.1
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 8.6e-85 318.2 312 54.2
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.1e-84 317.8 313 55.0
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.1e-84 317.8 312 54.5
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 4.3e-84 315.8 337 51.3
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 9.5e-84 314.7 312 55.1
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 9.5e-84 314.7 290 56.9
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.6e-83 313.9 292 57.2
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 2.8e-83 313.2 313 54.3
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 4.7e-83 312.4 313 54.3
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.8e-82 310.5 315 53.3
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 8.9e-82 308.1 313 53.7
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 1.3e-80 304.3 313 52.7
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.3e-80 304.3 313 52.7
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.3e-80 304.3 313 52.7
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.7e-80 303.9 239 65.7
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 8.3e-80 301.6 316 52.8
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 4.1e-79 299.3 319 50.8
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 3.9e-77 292.7 315 50.8
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 2.8e-75 286.6 302 51.3
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.7e-69 267.3 314 45.9
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 3.9e-69 266.2 277 53.8
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.1e-68 264.6 277 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 1.6e-67 260.8 284 51.1
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 2.1e-67 260.4 316 45.6
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 6.4e-64 248.8 315 47.0
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.6e-62 244.2 209 62.2
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 8.1e-59 231.9 263 48.7
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 2.6e-57 226.9 179 63.7
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 8.7e-53 211.8 243 52.7
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 7.1e-47 192.2 382 36.1
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.6e-43 181.0 230 48.3
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 9.3e-39 165.2 165 52.7
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 7.9e-30 135.6 123 58.5
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 4.8e-27 126.3 87 69.0
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 9.3e-23 112.1 110 52.7
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 1.3e-21 108.2 179 39.7
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 3.1e-18 97.1 115 55.7
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 3.4e-17 93.6 98 49.0
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 5.0e-16 89.7 68 61.8
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 2.1e-14 84.3 80 51.2
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 3.3e-12 77.0 76 51.3
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.2e-11 74.3 77 46.8
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 6.3e-11 72.8 55 60.0
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 4.5e-09 66.6 53 56.6
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.5e-09 66.6 154 33.1
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 5.5e-07 59.7 46 69.6
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 5.5e-07 59.7 92 44.6
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.1e-06 57.8 100 39.0


User provided reference genes

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